New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 555833	32 (0.830)	6 (0.210)	5/98	2.2	21.4%	coding (1223/1386 nt)	cysS	cysteinyl‑tRNA synthetase
	?	NC_000913	= 556784	20 (0.680)					coding (90/213 nt)	ybcJ	ribosome‑associated protein; putative RNA‑binding protein

TGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/555761‑555833 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcggcgcgcaggcGAAAATCGCGATTGCCGAAGGCCAGGTGAAAGTCGACGGTGCGGTTGAAACGCGCAAACGCT  <  NC_000913/556784‑556723                                                                                                                                         TGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCGAGAACCGGAAGCGTTACTGCAAAGCGGCGCG                                                                     >  2:71491/1‑68      AAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGC                                                                <  2:1432861/68‑1      AAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGC                                                                <  2:48336/68‑1                         GCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCG                                                               >  1:460298/1‑50                         GCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCG                                                               <  2:460295/50‑1                                        AACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCGAAAATCGCGATTGCCGAAGGCCAGGTGAACGTC                              >  2:865548/1‑68                                          CCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCGAAAATCGCGATTGCCGAAGGCCAGGTGAAAGTCGA                            >  1:1349326/1‑68                                          CCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCGAAAATCGCGATTGCCGAAGGCCAGGTGAAAGTCGA                            <  1:865553/68‑1                                          CCGGAAGCATTCCTGCAAAGCGGCGCGCAGGCGAAAATCGCGATTGCCGAAGGCCAGGTGAAAGTCGA                            >  1:346651/1‑68                                                            AGCGGCGCGCAGGCGAAAATCGCGATTGCCGAAGGCCAGGTGAAAGTCGACGGTGCGGTTGAAACGCG          <  2:1232877/68‑1                                                            AGCGGCGCGCAGGCGAAAATCGCGATTGCCGAAGGCCAGGTGAAAGTCGACGGTGCGGTTGAAACGCG          <  2:1232878/68‑1                                                                    GCAGGCGAAAATCGCGATTGCCGAAGGCCAGGCGAAAGTCGACGGTGCGGTTGAAACGCGCAAACGCT  <  1:873577/68‑1                                                                                                                                         TGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/555761‑555833 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcggcgcgcaggcGAAAATCGCGATTGCCGAAGGCCAGGTGAAAGTCGACGGTGCGGTTGAAACGCGCAAACGCT  <  NC_000913/556784‑556723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.