| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 555833 | 32 (0.830) | 6 (0.210) | 5/98 | 2.2 | 21.4% | coding (1223/1386 nt) | cysS | cysteinyl‑tRNA synthetase |
| ? | NC_000913 | = 556784 | 20 (0.680) | coding (90/213 nt) | ybcJ | ribosome‑associated protein; putative RNA‑binding protein | |||||
AGCGTTTGCGCGTTTCAACCGCACCGTCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAGCAAGTCGCACAGCTCAACGTGCGGA > NC_000913/556723‑556847 | aGCGTTTGCGCGTTTCAACCGCACCGTCGACTTTCGCCTGGCCTTCGGCAATCGCGATTTTCgcctgc < 1:873577‑M2/68‑7 (MQ=255) cgcgTTTCAACCGCACCGTCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCgcctgcgcgccgct < 2:1232878‑M2/68‑15 (MQ=255) cgcgTTTCAACCGCACCGTCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCgcctgcgcgccgct < 2:1232877‑M2/68‑15 (MQ=255) tttCAACCGCACCGTCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCg < 2:1404361/68‑1 (MQ=255) aaCCGCACCGTCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTcc > 1:847765/1‑68 (MQ=255) aCCGCACCGTCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCa > 1:14185/1‑68 (MQ=255) cGCACCGTCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGc > 1:679092/1‑68 (MQ=255) aCCGTCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCtt > 1:1164632/1‑68 (MQ=255) aCCGTCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCtt > 2:173864/1‑68 (MQ=255) tCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCgcctgcgcgccgctttgcaggaatgcttccgg > 1:346651‑M2/1‑36 (MQ=255) tCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCgcctgcgcgccgctttgcaggaacgcttccgg > 1:1349326‑M2/1‑36 (MQ=255) tCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCgcctgcgcgccgctttgcaggaacgcttccgg < 1:865553‑M2/68‑33 (MQ=255) gACGTTCACCTGGCCTTCGGCAATCGCGATTTTCgcctgcgcgccgctttgcaggaacgcttccggtt > 2:865548‑M2/1‑34 (MQ=255) ttCACCTGGCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAg < 2:895300/68‑1 (MQ=255) ccTGGCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAg < 1:1176205/50‑1 (MQ=255) ccTGGCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTACGCTCCAg > 2:1176201/1‑50 (MQ=255) gCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAGCAAGTCGc < 1:477452/68‑1 (MQ=255) gCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAGCAAGTCGc < 2:468568/68‑1 (MQ=255) gCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAGCAAGTCGc < 1:1015630/68‑1 (MQ=255) tCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAGCAAGTCGCACAg < 2:1171121/68‑1 (MQ=255) tCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAGCAAGTCGCACAg < 1:1413156/68‑1 (MQ=255) tCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAGCAAGTCGCACAg < 1:1326997/68‑1 (MQ=255) tCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAGCAAGTCGCACAg < 2:663419/68‑1 (MQ=255) ggCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAGCAAGTCGCACAGCt < 1:1006424/68‑1 (MQ=255) cgcgATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAGCAAGTCGCACAGCTCAACGt < 1:26819/68‑1 (MQ=255) ttttCGCCTGCGCGCCGCTATCGCTCCAGCCTTCCAGTGTCCGCAAGTCGCCCAGCTCACCGTGCGGa > 1:1234068/1‑68 (MQ=255) ccttCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAGCAAGTCGCACAGCTCAACGCGCGGa < 2:1244015/66‑1 (MQ=255) cgcctgcgcgccgctttgcaggaacgcttccggttcttgctccagcaggc > 1:460298‑M2/1‑1 (MQ=255) cgcctgcgcgccgctttgcaggaacgcttccggttcttgctccagcaggc < 2:460295‑M2/50‑50 (MQ=255) | AGCGTTTGCGCGTTTCAACCGCACCGTCGACTTTCACCTGGCCTTCGGCAATCGCGATTTTCGCCTGCGCGCCGCTTTCGCTCCAGCCTTCCAGTTTCAGCAAGTCGCACAGCTCAACGTGCGGA > NC_000913/556723‑556847 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |