| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 555833 | 32 (0.830) | 6 (0.210) | 5/98 | 2.2 | 21.4% | coding (1223/1386 nt) | cysS | cysteinyl‑tRNA synthetase |
| ? | NC_000913 | = 556784 | 20 (0.680) | coding (90/213 nt) | ybcJ | ribosome‑associated protein; putative RNA‑binding protein | |||||
AAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAG > NC_000913/555766‑555895 | aaaCTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGC < 2:48336‑M1/68‑1 (MQ=255)aaaCTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGC < 2:1432861‑M1/68‑1 (MQ=255) cTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAga > 2:1098606/1‑68 (MQ=255) cTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAga > 1:93764/1‑68 (MQ=255) cTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAga > 1:1426173/1‑68 (MQ=255) cTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAga > 1:1406242/1‑68 (MQ=255) cTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACAGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAga > 2:40220/1‑68 (MQ=255) ttCCGCAGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAgacg < 1:1417719/68‑1 (MQ=255) ccGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAgacgac < 2:93763/68‑1 (MQ=255) ccGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAgacgac < 2:1276750/68‑1 (MQ=255) gggCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTgg < 2:726464/68‑1 (MQ=255) gCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCg < 2:460295‑M1/50‑2 (MQ=255) gCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCg > 1:460298‑M1/1‑49 (MQ=255) gCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGGCGACAGCGAAGTGGCt > 1:1125105/1‑68 (MQ=255) gCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCt > 1:767246/1‑68 (MQ=255) gCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCt > 1:1151108/1‑68 (MQ=255) gCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCt > 1:1274991/1‑68 (MQ=255) gCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCt > 1:1004724/1‑68 (MQ=255) gCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCt > 1:613809/1‑68 (MQ=255) gCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCt > 1:36821/1‑68 (MQ=255) gCCTGCCGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCt > 2:460539/1‑68 (MQ=255) tgctgGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTgag < 2:1004719/68‑1 (MQ=255) ctgGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCg < 1:677378/55‑1 (MQ=255) ctgGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCg > 2:677374/1‑55 (MQ=255) cAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGc > 2:1086170/1‑68 (MQ=255) aaGAACCGGATGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCg < 1:1044294/68‑1 (MQ=255) aaGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCg < 1:1044291/68‑1 (MQ=255) aaGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCg < 1:1334752/68‑1 (MQ=255) aaCCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaacgtc > 2:865548‑M1/1‑34 (MQ=255) ccGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcga < 1:865553‑M1/68‑37 (MQ=255) ccGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcga > 1:1349326‑M1/1‑32 (MQ=255) ccGGAAGCATTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcga > 1:346651‑M1/1‑32 (MQ=255) gAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCa > 1:710615/1‑68 (MQ=255) aaGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCaa > 2:1400442/1‑68 (MQ=255) aGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGCCAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAAc > 2:66405/1‑68 (MQ=255) aGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAAc > 2:68099/1‑68 (MQ=255) gTTCCTGCTAAGCGGCGCGCAGGCAGACGACAGCGAAGTTGCTGAGATTGAATCGTTAATTCAACatc < 1:272268/68‑3 (MQ=255) gTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGc < 2:200417/68‑1 (MQ=255) tCCTGCAATGCGGCGCGCAGGCAGACTTCTGCGAAGTGGCTGAGATTGAAGCTTTAATTCAACAGCGt < 2:1306016/68‑1 (MQ=255) aGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcg < 2:1232878‑M1/68‑55 (MQ=255) aGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcg < 2:1232877‑M1/68‑55 (MQ=255) ggcgCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTTGTTCAACAGCGTCTGGATGccag > 2:118216/1‑66 (MQ=255) gcAGGCgaaaatcgcgattgccgaaggccaggcgaaagtcgacggtgcggttgaaacgcgcaaacgct < 1:873577‑M1/68‑63 (MQ=255) | AAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAG > NC_000913/555766‑555895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |