| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2277401 = | 34 (0.880) | 7 (0.210) | 5/110 | 2.5 | 20.4% | coding (1102/1590 nt) | yejF | microcin C ABC transporter ATPase |
| ? | NC_000913 | 2277552 = | 26 (0.790) | coding (1253/1590 nt) | yejF | microcin C ABC transporter ATPase | |||||
CGGTCAGCCACTGCAAAATTTAAATCGCCGCCAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAGATTATTGAGGAAGGCTTA > NC_000913/2277334‑2277466 | cGGTCAGCCACTGCAAAATTTAAATCGCCGCCAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTAt > 2:1372965/1‑68 (MQ=255)aatgccctggcaatcgcaatacgttgtcgctgaccaccagagaactccgccggataacggtggcgtgt > 2:31942‑M1/68‑68 (MQ=255)aatgccctggcaatcgcaatacgttgtcgctgaccaccagagaactccgccggataacggtggcgtgt > 2:1209587‑M1/68‑68 (MQ=255) tgccctggcaatcgcaatacgttgtcgctgcccaccagagaactccgccggataacggtggcgtgttt < 2:356369‑M1/3‑1 (MQ=255) tgccctggcaatcgcaatacgttgtcgctgaccaccagagaactccgccggataacggtggcgtgttt < 2:1208151‑M1/3‑1 (MQ=255) ccctggcaatcgcaataagttgtcgctgaccaccagagaactccgacggataacggtggcgtgTTTCa < 1:1364583‑M1/5‑1 (MQ=255) tggcaatcgcaatacgttgtcgctgaccaccagagaactccgccggataacggtggcgtgTTTCAGGa > 1:591149‑M1/61‑68 (MQ=255) ccACTGCAAAATTTAAATCGCCGCCAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGa < 2:391395/68‑1 (MQ=255) ggcaatcgcaatacgttgtcgctgaccaccagagaactccgccggataacggtggcgtgTTTCAGGAt > 1:520498‑M1/60‑68 (MQ=255) ggcaatcgcaatacgttgtcgctgaccaccagagaactccgccggataacggtggcgtgTTTCAGGAt > 2:75725‑M1/60‑68 (MQ=255) ggcaatcgcaatacgttgtcgctgaccaccagagaactccgccggataacggtggcgtgTTTCAGGAt > 1:401438‑M1/60‑68 (MQ=255) aCTGCAAAATTTAAATCGCCGCCAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATc < 1:1045370/68‑1 (MQ=255) aCTGCAAAATTTAAATCGCCGCCAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATc < 1:1258303/68‑1 (MQ=255) gCAAAATTTAAATCGCCGCCAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCaa > 1:1004788/1‑68 (MQ=255) gcaatacgttgtcgctgaccaccagagaactccgccggataacggtggcgtgTTTCAGGATCCAAAct < 2:1194538‑M1/16‑1 (MQ=255) aaaTTTAAATCGCCGCCAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAAct < 1:87939/68‑1 (MQ=255) caatacgttgtcgctgaccaccagagaactccgccggataacggtggcgtgTTTCAGGATCCAAActc < 2:409356‑M1/17‑1 (MQ=255) aTTTAAATCGCCGCCAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAActcc > 1:668025/1‑68 (MQ=255) tAAATCGCCGCCAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCg < 1:313573/68‑1 (MQ=255) tCGCCGCCAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCa < 1:352895/68‑1 (MQ=255) tCGCCGCCAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCa > 1:1454070/1‑68 (MQ=255) gccgccAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAAc < 1:170455/68‑1 (MQ=255) accaccagagaactccgccggataacggtggcgtgTTTCAGGATCCAAACTCCTCGCTCAACCCACGa > 1:508823‑M1/36‑68 (MQ=255) accaccagagaactccgccggataacggtggcgtgTTTCAGGATCCAAACTCCTCGCTCAACCCACGa > 2:731391‑M1/36‑68 (MQ=255) aGCTGTTACCTATTCGTCTTCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGa < 1:183320/68‑1 (MQ=255) gCTGTTACCTATTCGTCATCGCATTCAGGTTGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGAc < 1:588315/68‑1 (MQ=255) gCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGAc < 2:836189/68‑1 (MQ=255) gCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGAc < 1:1348873/68‑1 (MQ=255) gCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGAc < 1:405736/68‑1 (MQ=255) gCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGAc < 2:250197/68‑1 (MQ=255) gCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGAc < 1:339117/68‑1 (MQ=255) gCTGTTACCTATTCGTCATCACATTCAGGTTGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGAc < 1:934425/68‑1 (MQ=255) gCTGGTACCTATTCTTCATCGCATTCCGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGAc < 1:1424552/68‑1 (MQ=255) ccaccagagaactccgccggataacggtggcgtgTTTCAGGATCCAAACTCCTCGCTCAACCCACGAc > 1:712495‑M1/35‑68 (MQ=255) ccaccagagaactccgccggataacggtggcgtgTTTCAGGATCCAAACTCCTCGCTCAACCCACGAc > 1:113486‑M1/35‑68 (MQ=255) tACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAAc < 2:688289/68‑1 (MQ=255) tACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAAc < 1:1372970/68‑1 (MQ=255) agagaactccgccggataacggtggcgtgTTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAAc > 1:409358‑M1/30‑68 (MQ=255) gTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAg > 2:1084860/1‑68 (MQ=255) tCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAGa < 1:1036081/68‑1 (MQ=255) aTCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAGatt < 2:1392878/68‑1 (MQ=255) aTCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAGatt < 1:43590/68‑1 (MQ=255) aTCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAGatt < 2:929356/68‑1 (MQ=255) cGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAGattat < 2:1093258/68‑1 (MQ=255) gtggtATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAGATTATTGAGGAAgg > 2:435958/1‑68 (MQ=255) gtggtATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAGATTATTGAGGAAgg > 2:836340/1‑68 (MQ=255) tggtATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAGATTATTGAGGAAGGc < 1:785071/68‑1 (MQ=255) tggcATTTCAGGATCCAAACTCCTCGCTCACCCCACGACTCAACGTTTTGCAGATTATTGAGGAAGGc < 2:650202/68‑1 (MQ=255) tATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAGATTATTGAGGAAGGCTTa < 2:717813/68‑1 (MQ=255) tATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAGATTATTGAGGAAGGCTTa > 1:26192/1‑68 (MQ=255) | CGGTCAGCCACTGCAAAATTTAAATCGCCGCCAGCTGTTACCTATTCGTCATCGCATTCAGGTGGTATTTCAGGATCCAAACTCCTCGCTCAACCCACGACTCAACGTTTTGCAGATTATTGAGGAAGGCTTA > NC_000913/2277334‑2277466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |