| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 857638 = | NA (NA) | 13 (0.730) | 5/118 | 1.2 | 36.1% | noncoding (23/98 nt) | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 857687 = | 23 (1.290) | noncoding (72/98 nt) | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TGCGGCGTTAACGCCTTATCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCAGGTACTGCGTAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/857707‑857638‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACG > NC_000913/857687‑857749 TGCGGCGTTAACGCCTTATCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCAGGTACTGCGTAGG > 2:613291/1‑68TGCGGCGTTAACGCCTTATCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCAGGTACTGCGTAGG < 2:52832/68‑1 CCTGCAGATTCAATATATTGCAGGTACTGCGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTA < 1:16670/68‑1 CCTGCAGATTCAATATATTGCAGGTACTGCGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTA > 2:222013/1‑68 CCTGCAGATTCAATATATTGCAGGTACTGCGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTA > 2:16670/1‑68 CCTGCAGATTCAATATATTGCAGGTACTGCGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTA > 1:345308/1‑68 CCTGCAGATTCAATATATTGCAGGTACTGCGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTA < 1:222013/68‑1 CTGCAGATTCAATATATTGCAGGTACTGCGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAA < 2:345309/68‑1 CGTAGGCCTGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTA > 2:245335/1‑68 CGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAA < 1:737259/43‑1 CGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAA > 2:737260/1‑43 CGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAA < 2:156405/40‑1 CGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAA < 1:263154/40‑1 CGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAA > 2:263154/1‑40 CGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAA > 1:156405/1‑40 GTAGGCCGGATACGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAA > 1:522589/1‑68 GTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAA > 1:564611/1‑68 GTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCA < 1:70904/58‑1 GTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCA > 2:70904/1‑58 AGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACG > 2:490206/1‑68 TGCGGCGTTAACGCCTTATCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCAGGTACTGCGTAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/857707‑857638‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACG > NC_000913/857687‑857749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |