| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 857638 = | NA (NA) | 13 (0.730) | 5/118 | 1.2 | 36.1% | noncoding (23/98 nt) | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 857687 = | 23 (1.290) | noncoding (72/98 nt) | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
ATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACG > NC_000913/857621‑857749 | aTGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAAAATATTGAATCTGCAGGACTTTGTAGGCCgg > 2:326830/1‑68 (MQ=255) gCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGt > 2:425883/1‑68 (MQ=255) ttATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTa > 1:629826/1‑68 (MQ=255) tCAGGCCTACGCAGTACCTGCTATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAAcg > 2:170928/1‑68 (MQ=255) CCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCa > 2:613291‑M1/1‑68 (MQ=255) CCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCa < 2:52832‑M1/68‑1 (MQ=255) gCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAgg < 2:609520/68‑1 (MQ=255) gCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAgg > 2:161707/1‑68 (MQ=255) gCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAgg > 1:750419/1‑68 (MQ=255) cctgcagattcaatatattgcaggtactgcgtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTa < 1:16670‑M2/31‑1 (MQ=255) cctgcagattcaatatattgcaggtactgcgtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTa > 2:222013‑M2/38‑68 (MQ=255) cctgcagattcaatatattgcaggtactgcgtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTa > 2:16670‑M2/38‑68 (MQ=255) cctgcagattcaatatattgcaggtactgcgtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTa < 1:222013‑M2/31‑1 (MQ=255) cctgcagattcaatatattgcaggtactgcgtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTa > 1:345308‑M2/38‑68 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCa < 1:334021/58‑1 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCa > 2:334021/1‑58 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGctat < 2:293082/67‑4 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGctat > 1:293082/1‑64 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTa > 1:434781/1‑68 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTa < 2:543167/68‑1 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTa > 2:353287/1‑68 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTa > 1:477536/1‑68 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTa > 1:201602/1‑68 (MQ=255) ctgcagattcaatatattgcaggtactgcgtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTaa < 2:345309‑M2/32‑1 (MQ=255) cAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAGCaaa > 2:150482/1‑68 (MQ=255) atTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCAt > 2:457577/1‑68 (MQ=255) atTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCAt > 2:158711/1‑68 (MQ=255) aTCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCa > 1:39734/1‑49 (MQ=255) aTCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCa < 2:39734/49‑1 (MQ=255) tGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCatc < 2:201602/68‑3 (MQ=255) cTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGa < 2:255407/68‑1 (MQ=255) cgtaggccTGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTa > 2:245335‑M2/9‑68 (MQ=255) cgtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTaa > 2:263154‑M2/9‑40 (MQ=255) cgtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTaa < 1:263154‑M2/32‑1 (MQ=255) cgtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTaa < 2:156405‑M2/32‑1 (MQ=255) cgtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTaa > 1:156405‑M2/9‑40 (MQ=255) cgtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTAACaa > 2:737260‑M2/9‑43 (MQ=255) cgtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTAACaa < 1:737259‑M2/35‑1 (MQ=255) gtaggccGGATACGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTaa > 1:522589‑M2/8‑68 (MQ=255) gtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCa < 1:70904‑M2/51‑1 (MQ=255) gtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCa > 2:70904‑M2/8‑58 (MQ=255) gtaggccGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTaa > 1:564611‑M2/8‑68 (MQ=255) aggccGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACg > 2:490206‑M2/6‑68 (MQ=255) | ATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACG > NC_000913/857621‑857749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |