| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 857638 = | NA (NA) | 13 (0.730) | 5/118 | 1.2 | 36.1% | noncoding (23/98 nt) | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 857687 = | 23 (1.290) | noncoding (72/98 nt) | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
CCGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACG > NC_000913/857572‑857702 | ccGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAgg < 1:238566/68‑1 (MQ=255) cgttactcagattgctgacaaatgcgctttgttaatgcctgatgcggcgttaacgccttatccGGCCt > 2:490206‑M1/64‑68 (MQ=255) ttactcagattgctgacaaatgcgctttgttaatgcctgatgcggcgttaacgccttatccGGCCTAc > 1:564611‑M1/62‑68 (MQ=255) ttactcagattgctgacaaatgcgctttgttaatgcctgatgcggcgttaacgccgtatccGGCCTAc > 1:522589‑M1/62‑68 (MQ=255) aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGTCCTAc < 2:131181/68‑1 (MQ=255) aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc < 2:73154/68‑1 (MQ=255) aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc > 2:709853/1‑68 (MQ=255) aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc > 2:396983/1‑68 (MQ=255) tactcagattgctgacaaatgcgctttgttaatgcctgatgcggcgttaacgccttatcaGGCCTACg > 2:245335‑M1/61‑68 (MQ=255) cTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACg < 1:152186/68‑1 (MQ=255) cGGGGTGACGGCGGCTGTTGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGt < 1:143598/68‑1 (MQ=255) cGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGt < 2:697088/68‑1 (MQ=255) gggTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTAc < 1:591778/68‑1 (MQ=255) gggTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTAc < 2:73502/68‑1 (MQ=255) tgctgacaaatgcgctttgttaatgcctgatgcggcgttaacgccttatccGGCCTAc < 1:70904‑M1/7‑1 (MQ=255) tgctgacaaatgcgctttgttaatgcctgatgcggcgttaacgccttatccGGCCTAc > 2:70904‑M1/52‑58 (MQ=255) tGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTg > 2:745257/1‑68 (MQ=255) gACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGc < 1:219106/68‑1 (MQ=255) ggcggcTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAat > 1:729714/1‑68 (MQ=255) cggcTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAatat < 2:398320/68‑1 (MQ=255) cggcTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAatat < 1:709852/68‑1 (MQ=255) tgatgaCAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc > 2:135737/1‑48 (MQ=255) tgatgaCAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:135737/48‑1 (MQ=255) aCAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATCTTGAATCt < 1:569032/68‑1 (MQ=255) ttgttaatgcctgatgcggcgttaacgccttatccGGCCTACg > 2:737260‑M1/36‑43 (MQ=255) ttgttaatgcctgatgcggcgttaacgccttatccGGCCTACg < 1:737259‑M1/8‑1 (MQ=255) ttaatgcctgatgcggcgttaacgccttatccGGCCTACg < 2:156405‑M1/8‑1 (MQ=255) ttaatgcctgatgcggcgttaacgccttatccGGCCTACg < 1:263154‑M1/8‑1 (MQ=255) ttaatgcctgatgcggcgttaacgccttatccGGCCTACg > 1:156405‑M1/33‑40 (MQ=255) ttaatgcctgatgcggcgttaacgccttatccGGCCTACg > 2:263154‑M1/33‑40 (MQ=255) ttaatgcctgatgcggcgttaacgccttatccGGCCTACGCAGTACCTGCAATATATTGAATCTGCAg < 2:345309‑M1/36‑1 (MQ=255) taatgcctgatgcggcgttaacgccttatccGGCCTACGCAGTACCTGCAATATATTGAATCTGCAgg > 2:222013‑M1/32‑68 (MQ=255) taatgcctgatgcggcgttaacgccttatccGGCCTACGCAGTACCTGCAATATATTGAATCTGCAgg < 1:16670‑M1/37‑1 (MQ=255) taatgcctgatgcggcgttaacgccttatccGGCCTACGCAGTACCTGCAATATATTGAATCTGCAgg > 2:16670‑M1/32‑68 (MQ=255) taatgcctgatgcggcgttaacgccttatccGGCCTACGCAGTACCTGCAATATATTGAATCTGCAgg > 1:345308‑M1/32‑68 (MQ=255) taatgcctgatgcggcgttaacgccttatccGGCCTACGCAGTACCTGCAATATATTGAATCTGCAgg < 1:222013‑M1/37‑1 (MQ=255) tGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAgg < 1:79970/68‑1 (MQ=255) tGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAgg < 2:492733/68‑1 (MQ=255) gCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCTATATATTGAATCTGCAGGACTTTGTAg > 2:93282/1‑68 (MQ=255) gCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAg > 2:92262/1‑68 (MQ=255) cTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGc > 1:301883/1‑68 (MQ=255) aTGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAAAATATTGAATCTGCAGGACTTTGTAGGCCgg > 2:326830/1‑68 (MQ=255) gCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGt > 2:425883/1‑68 (MQ=255) ttATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTa > 1:629826/1‑68 (MQ=255) tCAGGCCTACGCAGTACCTGCTATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAAcg > 2:170928/1‑68 (MQ=255) | CCGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACG > NC_000913/857572‑857702 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |