New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1792600	16 (0.800)	6 (0.340)	3/118	1.8	27.7%	coding (132/465 nt)	nlpC	putative C40 clan peptidase lipoprotein
	?	NC_000913	= 1792651	17 (0.950)					coding (81/465 nt)	nlpC	putative C40 clan peptidase lipoprotein

AACCACAAATCCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1792531‑1792600 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccagACTTTCTGATTCGATTACCGTTATTGCCGGTTTGAACGACCAGCTACAAAGCTGGCATGGCACGCC  <  NC_000913/1792651‑1792586                                                                                                                                          agCCACAAATCCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCC                                                                      >  1:442852/3‑68   CCACAAATCCCGAACAGTCCACACCGCGCCGCGTCATGCCGCCATAACGATACGGCGTGCCCTGCCAG                                                                    >  1:106444/1‑68                                 GCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGACTTTCTGATTCGATTACCGTTATTGCCGG                                      >  1:616663/1‑68                                 GCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGACTTTCTGATTCGATTACCGTTATTGCCGG                                      >  2:755231/1‑68                                    TCATGCCACCATAACGATACGGCGTGCCATGCCAG‑CTTTCTGATTCGATTACCGTTATTGCCGGTTTG                                  <  1:421228/68‑1                                     CATGCCACCATAACGATACGGCGTGCCATGCCAGACTTTCTGATTCGATTACCGTTATTGCCGGTTTG                                  <  1:755230/68‑1                                                AACGATACGGCGTGCCATGCCAGACTTTCTGATTCGATTACCGTTATTGCCGGTTTGAACGACCAGCT                       <  2:246680/68‑1                                                AACGATACGGCGTGCCATGCCAGACTTTCTGATTCGATTACCGTTATTGCCGGTTTGAACGACCAGCT                       <  2:616664/68‑1                                                                    CAGACTTTCTGATTCGATTACCGTAATTGCCGGTTTGAACGACCAGCTACAAAGCTGGCATGGCACGC   <  2:267022/68‑1                                                                     AGACTTTCTGATTCGATTACCGTTATTGCCGGTTTGAACGACCAGCTACAAAGCTGGCATGGCACGCC  <  1:325287/68‑1                                                                                                                                          AACCACAAATCCCGAACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1792531‑1792600 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccagACTTTCTGATTCGATTACCGTTATTGCCGGTTTGAACGACCAGCTACAAAGCTGGCATGGCACGCC  <  NC_000913/1792651‑1792586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.