New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2077808 =	13 (0.650)	5 (0.310)	4/108	1.3	20.2%	coding (240/375 nt)	cbtA	CP4‑44 prophage; toxin of the YeeV‑YeeU toxin‑antitoxin system
	?	NC_000913	2077982 =	29 (1.780)					pseudogene (43/168 nt)	yeeW	CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related

CCGGTCGCCCTGCGAGCCCGGAGGATATCGATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2077873‑2077808 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacaggcgctgGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGC  >  NC_000913/2077982‑2078046                                                                                                                                     CCGGTCGCCCTGCGAGCCCGGAGGATATCGATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTGca                                                                 >  2:101724/1‑66    GTCGCCCTGCGAGCCCGGAGGATATCGATGCTGTTTATTAACTGAGAGCGGGTACGGGCGCTGGATAT                                                              <  1:522533/68‑1                            TCGAAGCTGTTTAATAACTGAGAGCGGGTACAGGCGCTGGATATGGGGCACATTGTCGTTGTCATTGA                                      >  1:549977/1‑68                              GATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATG                                    >  2:631845/1‑68                              GATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACA                                          >  1:399763/1‑62                              GATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACA                                          <  2:399764/62‑1                                                            GGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGG      >  1:126425/1‑68                                                              CGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCC    >  1:414328/1‑68                                                                CTGGATATGGTGCACATTGTCGTTGTCATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGC  <  2:549978/68‑1                                                                                                                                     CCGGTCGCCCTGCGAGCCCGGAGGATATCGATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2077873‑2077808 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacaggcgctgGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGC  >  NC_000913/2077982‑2078046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.