| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2077808 = | 13 (0.650) | 5 (0.310) | 4/108 | 1.3 | 20.2% | coding (240/375 nt) | cbtA | CP4‑44 prophage; toxin of the YeeV‑YeeU toxin‑antitoxin system |
| ? | NC_000913 | 2077982 = | 29 (1.780) | pseudogene (43/168 nt) | yeeW | CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related | |||||
ACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGG > NC_000913/2077742‑2077873 | aCTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCa > 2:513196/1‑68 (MQ=255) gcggccttattaatcagttcagtgatattaacaccatcaatgacaacgacaatgtgcaccatatcCAg < 2:549978‑M1/3‑1 (MQ=255) gtgtgATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAgcg > 1:252484/1‑68 (MQ=255) gtgtgATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAgcg > 1:262009/1‑68 (MQ=255) ggccttattaatcagttcagtgatattaacaccatcaatgtcaacgacaatgtgccccatatcCAgcg > 1:414328‑M1/64‑68 (MQ=255) ccttattaatcagttcagtgatattaacaccatcaatgtcaacgacaatgtgccccatatcCAGCGcc > 1:126425‑M1/62‑68 (MQ=255) aTGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGt < 2:255801/68‑1 (MQ=255) tttCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCa < 1:347679/68‑1 (MQ=255) tttCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCa < 2:310845/68‑1 (MQ=255) ctcGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGtt < 1:243508/68‑1 (MQ=255) ctcGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGtt > 2:418956/1‑68 (MQ=255) ctcGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGtt < 1:698505/68‑1 (MQ=255) catcaatgtcaacgacaatgtgccccatatcCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATc > 2:631845‑M1/32‑68 (MQ=255) aCGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATc < 2:505827/68‑1 (MQ=255) aCGCGCTGGCGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATc < 1:660626/68‑1 (MQ=255) tcaatgacaacgacaatgtgccccatatcCAGCGCCTGTACCCGCTCTCAGTTATTAAACAGCTTCGa > 1:549977‑M1/30‑68 (MQ=255) tgtcaacgacaatgtgccccatatcCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATc < 2:399764‑M1/37‑1 (MQ=255) tgtcaacgacaatgtgccccatatcCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATc > 1:399763‑M1/26‑62 (MQ=255) ggTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATAtcc > 2:181391/1‑68 (MQ=255) cGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCg < 2:240502/68‑1 (MQ=255) atatcCAGCGCCCGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGAc < 1:522533‑M1/63‑1 (MQ=255) tgCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCgg > 2:101724‑M1/3‑68 (MQ=255) | ACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGG > NC_000913/2077742‑2077873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |