| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2077808 = | 13 (0.650) | 5 (0.310) | 4/108 | 1.3 | 20.2% | coding (240/375 nt) | cbtA | CP4‑44 prophage; toxin of the YeeV‑YeeU toxin‑antitoxin system |
| ? | NC_000913 | 2077982 = | 29 (1.780) | pseudogene (43/168 nt) | yeeW | CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related | |||||
CCTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGC > NC_000913/2077916‑2078046 | ccTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGa > 2:573147/1‑68 (MQ=255) gtcgccctgcgagcccggaggatatcgatgctgtttattaactgagagcgggtacgggcgctgGatat < 1:522533‑M2/5‑1 (MQ=255) gggTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGatat < 1:353258/68‑1 (MQ=255) gTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATgg > 2:594258/1‑68 (MQ=255) gTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATgg > 2:42436/1‑68 (MQ=255) gTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATgg > 2:102115/1‑68 (MQ=255) tAAGTATCCGGAGGCTTATTGATGACACTTGAAGCCGACAGCGTTATCGTACAGGCGCTGTATATgtg < 2:669289/68‑3 (MQ=255) tAAGTATCCGGAGGCGAAATGATGACACTGAAAGCCGACAGCGTTAACGTACAGGCGCTGGATATggg > 2:372682/1‑68 (MQ=255) aaGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATgggg < 1:208539/68‑1 (MQ=255) tATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGcac > 2:305627/1‑68 (MQ=255) ccGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACAtt > 2:720120/1‑68 (MQ=255) ggCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGt > 1:679653/1‑68 (MQ=255) gAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGa < 2:369699/68‑1 (MQ=255) aaTGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACa < 1:506461/68‑1 (MQ=255) gatgaCACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTg < 2:712402/68‑1 (MQ=255) gatgaCACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGATGCCATTg > 2:130370/1‑68 (MQ=255) tcgaagctgtttaataactgagagcgggtacaggcgctgGATATGGGGCACATTGTCGTTGTCATTGa > 1:549977‑M2/40‑68 (MQ=255) atgaCACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGa < 2:679654/68‑1 (MQ=255) gatgctgtttattaactgagagcgggtacaggcgctgGATATGGGGCACATTGTCGTTGACa > 1:399763‑M2/38‑62 (MQ=255) gatgctgtttattaactgagagcgggtacaggcgctgGATATGGGGCACATTGTCGTTGACa < 2:399764‑M2/25‑1 (MQ=255) gatgctgtttattaactgagagcgggtacaggcgctgGATATGGGGCACATTGTCGTTGACATTGATg > 2:631845‑M2/38‑68 (MQ=255) cacTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGgt < 1:102115/68‑1 (MQ=255) gcTGGATGCCGTCAGCGTTTACTTACAGTCTCTGTATTTTTTGCACATTGTCGTTGACATTGATGttg < 2:501787/67‑1 (MQ=255) ggAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTa < 1:594257/68‑1 (MQ=255) ggAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTa < 1:42436/68‑1 (MQ=255) ccGACAGCGATAACGTACAGGCGCTGGATATGGGACACATTGTCGATGACATAGAAGGAGTTAATATc > 1:501786/1‑68 (MQ=255) gCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCactgaa > 1:259432/1‑68 (MQ=255) gTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCactgaact < 1:418955/68‑1 (MQ=255) gTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCactgaact < 2:32317/68‑1 (MQ=255) tAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCactgaactga < 1:662778/68‑1 (MQ=255) tAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCactgaactga < 1:181391/68‑1 (MQ=255) tAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCactgaactga < 1:610369/68‑1 (MQ=255) cGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATta < 2:103389/68‑1 (MQ=255) cGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATta > 1:430385/1‑68 (MQ=255) ggcgctgGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAgg > 1:126425‑M2/8‑68 (MQ=255) cgctgGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGcc > 1:414328‑M2/6‑68 (MQ=255) ctgGATATGGTGCACATTGTCGTTGTCATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGc < 2:549978‑M2/65‑1 (MQ=255) gATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATc < 2:557671/42‑1 (MQ=255) gATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATc > 1:557670/1‑42 (MQ=255) | CCTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGC > NC_000913/2077916‑2078046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |