New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3625629 =	NA (NA)	4 (0.220)	4/120	1.5	40.0%	noncoding (41/82 nt)	RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	3625675 =	6 (0.330)					intergenic (+161/+4)	yhhI/yhhJ	putative transposase/putative ABC transporter permease

ACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3625699‑3625629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaattGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCC  >  NC_000913/3625675‑3625741                                                                                                                                            ACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCA                                                                        >  1:162786/1‑68                                             TTATAGGGACTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA                           >  1:86446/1‑68                                               ATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTG                                                      <  1:400183/40‑1                                               ATAGGGACTACGCATCGGTGCAATTGTATTTACGCCATTG                                                      >  2:400184/1‑40                                               ATAGGGACTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGC                         <  2:86446/68‑1                                                                     ATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCG    <  1:390881/68‑1                                                                       TGTATTTACGCCATTGTCCCAATAGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGACGCC  >  2:745758/1‑68                                                                                                                                            ACGATTGGGACAATGGCGTAAATACAATTGCCCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3625699‑3625629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaattGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCC  >  NC_000913/3625675‑3625741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.