New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3625629 =	NA (NA)	4 (0.220)	4/120	1.5	40.0%	noncoding (41/82 nt)	RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	3625675 =	6 (0.330)					intergenic (+161/+4)	yhhI/yhhJ	putative transposase/putative ABC transporter permease

AAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCC  >  NC_000913/3625610‑3625741                                                                  |                                                                   aaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa                                                                  <  1:439594/68‑1 (MQ=255)              tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt                                                     <  2:569979/68‑1 (MQ=255)               cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc                                                    <  1:199677/68‑1 (MQ=255)               cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc                                                    <  1:702588/68‑1 (MQ=255)                       TGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGt                                            >  1:162786‑M1/1‑68 (MQ=255)                                  gTAGTCCCTATAAGCTTCCGCATCGGGCAATTGGATTTACGCCGTTGTCCCAATCGTCTTCCTGCATc                                 >  1:44279/1‑68 (MQ=38)                                        ttatagggactacgcatcgggcaattGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagca                           >  1:86446‑M2/27‑68 (MQ=255)                                         atagggactacgcatcggtgcaattGTATTTACGCCATTg                                                      <  1:400183‑M2/15‑1 (MQ=255)                                         atagggactacgcatcggtgcaattGTATTTACGCCATTg                                                      >  2:400184‑M2/26‑40 (MQ=255)                                          atagggactacgcatcgggcaattGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc                         <  2:86446‑M2/44‑1 (MQ=255)                                                cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg                   >  2:662096/1‑68 (MQ=255)                                                               attGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGcgccg    <  1:390881‑M2/65‑1 (MQ=255)                                                                 tGTATTTACGCCATTGTCCCAATAGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCgacgcc  >  2:745758‑M2/2‑68 (MQ=255)                                                                  |                                                                   AAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCC  >  NC_000913/3625610‑3625741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.