| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3625629 = | NA (NA) | 4 (0.220) | 4/120 | 1.5 | 40.0% | noncoding (41/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3625675 = | 6 (0.330) | intergenic (+161/+4) | yhhI/yhhJ | putative transposase/putative ABC transporter permease | |||||
ACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTC > NC_000913/3625562‑3625691 | ggcgtcgcatttttcaccattgcgctgctgcgattcaggaagactattgggacaatggcgtaaataca > 2:745758‑M1/68‑68 (MQ=255)aCTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATaa < 1:121190/68‑1 (MQ=255)aCTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATaa > 2:535594/1‑68 (MQ=255)aCTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATaa > 2:183459/1‑68 (MQ=255) cggcgcatttttcaccattgcgctgctgcgattcaggaagacgattgggacaatggcgtaaatacAAt < 1:390881‑M1/3‑1 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGa < 1:356763/68‑1 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGa > 1:400905/1‑68 (MQ=255) gtttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGa < 2:26640/67‑1 (MQ=255) ctttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGa < 1:367776/67‑1 (MQ=255) tGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGc < 1:425768/68‑1 (MQ=255) tGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGc < 1:86786/68‑1 (MQ=255) gTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:322949/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 2:91553/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 2:589879/68‑1 (MQ=255) aGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTccc < 1:74384/68‑1 (MQ=255) aGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTccc < 1:190652/68‑1 (MQ=255) gTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 2:400906/68‑1 (MQ=255) gTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:196289/68‑1 (MQ=255) gctgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGC‑CCGATGCGTAGTCCCtat < 2:86446‑M1/24‑1 (MQ=255) tgctgcgattcaggaagacgattgggacaatggcgtaaatacAATTGC‑CCGATGCGTAGTCCCTATaa > 1:86446‑M1/43‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATAGCACCGATGCGTAGTCCCTATAAGCt < 2:373925/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCg > 2:390882/1‑68 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACCCATCg > 2:340600/1‑68 (MQ=255) cGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCggg > 2:87760/1‑68 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 2:123257/68‑1 (MQ=255) aaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa < 1:439594/68‑1 (MQ=255) caatggcgtaaatacAATTGCACCGATGCGTAGTCCCtat > 2:400184‑M1/16‑40 (MQ=255) caatggcgtaaatacAATTGCACCGATGCGTAGTCCCtat < 1:400183‑M1/25‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 2:569979/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:702588/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:199677/68‑1 (MQ=255) | ACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTC > NC_000913/3625562‑3625691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |