| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3071424 | 14 (0.700) | 5 (0.290) | 3/116 | 1.7 | 23.6% | intergenic (‑180/+35) | fbaA/pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| ? | NC_000913 | = 3071467 | 20 (1.140) | coding (1156/1164 nt) | pgk | phosphoglycerate kinase | |||||
TCTCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTCCCTGCCCTGTGATTTTTTACTTCTTAGCGCGCTCTTCGAGCATCGCTA > NC_000913/3071357‑3071490 | tctctTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCT > 1:353063‑M1/1‑68 (MQ=255)tctctTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCT > 2:370847‑M1/1‑68 (MQ=255) cGCCTTCCTGCGACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAg > 1:207219/1‑68 (MQ=255) cGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAg > 1:253117/1‑68 (MQ=255) cGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAg > 2:658978/1‑68 (MQ=255) gCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAgg < 2:353064/68‑1 (MQ=255) tCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAg < 1:649860/68‑1 (MQ=255) gCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTaagaagtaaaaaatcac > 2:194649‑M1/1‑51 (MQ=255) gCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTaagaagtaaaaaatcac > 1:328065‑M1/1‑51 (MQ=255) gCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGttt > 2:593881/1‑68 (MQ=255) cGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTccctgc < 2:330085/68‑1 (MQ=255) agagTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTCCCTGCCCTGTGAttt < 1:363259/68‑1 (MQ=255) gTATGAAAAATTGCGTGCTCTAAAAGCGCGCTaagaagtaaaaaatcacagggcagggaaacctgccc < 1:194649‑M1/68‑37 (MQ=255) gTATGAAAAATTGCGTGCTCTAAAAGCGCGCTaagaagtaaaaaatcacagggcagggaaacctgccc < 2:328065‑M1/68‑37 (MQ=255) gTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTccctgc < 1:32082/55‑1 (MQ=255) gTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTccctgc > 2:32082/1‑55 (MQ=255) aTGAAAAATTGCGTGCTCTAAAAGCGCGCTaagaagtaaaaaatcacagggcagggaaacctgccctt < 2:89940‑M1/68‑39 (MQ=255) aTTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTCCCTGCCCTGTGATTTTTTACTTCTTag < 2:263652‑M2/68‑3 (MQ=255) aTTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTCCCTGCCCTGTGATTTTTTACTTCTTag > 2:104639‑M2/1‑66 (MQ=255) aTTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTCCCTGCCCTGAGATTTTTTACTTCTTag < 1:40647‑M2/68‑3 (MQ=255) tGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTCCCTGCACTGTGATTTTTTACTTCTTagcg < 2:548657‑M2/68‑5 (MQ=255) aGCGCGCTGAAACAAGGGCAGGTTTCCCTGCCCTGTGATTTTTTACTTCTTAGCGCGCTCTTCGAGCa > 2:113766/1‑68 (MQ=255) aGCGCGCTGAAACAAGGGCAGGTTTCCCTGCCCTGTGATTTTTTACTTCTTAGCGCGCTCTTCGAGCa > 1:191270/1‑68 (MQ=255) aGCGCGCTGAAACAAGGGAAGGTTTCCCTGCACTGAGATTTATTACTTCTTAGCGCGCACTTCGAGCa > 2:567614/1‑68 (MQ=255) cgcgcTGAAACAAGGGCAGGTTTCCCTGCCCTGTGATTTTTTACTTCTTAGCGCGCTCTTCGAGCATc < 1:578438/68‑1 (MQ=255) cgcTaagaagtaaaaaatcacagtgcagggaaacctgcccttgtttcagcgcgcttttagagcacgca < 2:548657‑M1/68‑65 (MQ=255) cTaagaagtaaaaaatctcagggcagggaaacctgcccttgtttcagcgcgcttttagagcacgcaat < 1:40647‑M1/68‑67 (MQ=255) cTaagaagtaaaaaatcacagggcagggaaacctgcccttgtttcagcgcgcttttagagcacgcaat < 2:263652‑M1/68‑67 (MQ=255) cTaagaagtaaaaaatcacagggcagggaaacctgcccttgtttcagcgcgcttttagagcacgcaat > 2:104639‑M1/1‑2 (MQ=255) | TCTCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGAAAAATTGCGTGCTCTAAAAGCGCGCTGAAACAAGGGCAGGTTTCCCTGCCCTGTGATTTTTTACTTCTTAGCGCGCTCTTCGAGCATCGCTA > NC_000913/3071357‑3071490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |