New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3419891 =	39 (1.510)	6 (0.300)	3/104	2.0	20.5%	pseudogene (785/960 nt)	yhdW	pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily
	?	NC_000913	3420220 =	16 (0.790)					coding (87/1182 nt)	yhdX	putative amino acid ABC transporter permease

GCTCAAAAATTTCCGAGTAGTTACCCACCTGTTTGATGATGTTATAGGCCCATTTATTATCCAGCTTCAGATCCTTGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3419971‑3419891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCA  >  NC_000913/3420220‑3420275                                                                                                                                           GCTCAAAAATTTCCGAGTAGTTACCCACCTGTTTGATGATGTTATAGGCCCATTTATTATCCAGCTTC                                                                       >  1:123287/1‑68         ATTTCCGAGTAGTTACCCACCTGTTTGATGATGTTATAGGCCCATTTATTATCCAGCTTCAGATCCTT                                                               >  1:260093/1‑68           TTCCGAGTAGTTACCCACCTGTTTGATGATGTTATAGGCCCATTTATTATCCAGCTTCAGATCCTTGC                                                             <  2:9756/68‑1                   AGTTACCCACCTGTTTGATGATGTTATAGGCCCATTTATTATCCAGCTTCAGATCCTTGCCGTTGTTG                                                     <  1:497328/68‑1                                   GATGATGTTATAGGCCCATTTATTATCCAGCTTCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGT                                     >  2:220271/1‑68                                   GATGATGTTATAGGCCCATTTATTATCCAGCTTCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGT                                     >  2:787472/1‑68                                      GATGTTATAGGCCCATTTATTATCCAGCTTCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGG                                  >  1:226869/1‑68                                      GATGTTATAGGCCCATTTATTATCCAGCTTCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGG                                  >  1:545195/1‑68                                      GATGTTATAGGCCCATTTATTATCCAGCTTCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGG                                  >  2:529869/1‑68                                                                        TCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCA  <  1:357545/66‑1                                                                        TCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCA  >  1:93957/1‑66                                                                        TCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCA  >  2:357545/1‑66                                                                        TCCTTGCCGTTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCA  <  2:93957/66‑1                                                                                                                                           GCTCAAAAATTTCCGAGTAGTTACCCACCTGTTTGATGATGTTATAGGCCCATTTATTATCCAGCTTCAGATCCTTGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3419971‑3419891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagatccttgccgtTGTTGCTGTTGTCGGCATTGTTGGTTGGTTATTTCACAACACTGTAACGAATCTCA  >  NC_000913/3420220‑3420275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.