| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3419891 = | 39 (1.510) | 6 (0.300) | 3/104 | 2.0 | 20.5% | pseudogene (785/960 nt) | yhdW | pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| ? | NC_000913 | 3420220 = | 16 (0.790) | coding (87/1182 nt) | yhdX | putative amino acid ABC transporter permease | |||||
GATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACT > NC_000913/3419827‑3419953 | gATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACgg > 1:27782/1‑68 (MQ=255) aaaGCGTCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGa < 1:120418/68‑1 (MQ=255) aaaGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGTGTAAATAAGTCGATTACGGCAAGGa < 1:655043/68‑1 (MQ=255) aaaGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGa < 2:705024/68‑1 (MQ=255) aaaGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGa < 2:293563/68‑1 (MQ=255) aaGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGAt < 2:301398/68‑1 (MQ=255) aaGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGAt < 1:824922/68‑1 (MQ=255) tgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGa < 2:93957‑M1/10‑1 (MQ=255) tgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGa > 2:357545‑M1/57‑66 (MQ=255) tgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGa < 1:357545‑M1/10‑1 (MQ=255) tgagattcgttacagtgttgtgaaataaccaaccaacaatgccgacaacagcaacaACGGCAAGGa > 1:93957‑M1/57‑66 (MQ=255) tAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGc < 2:905178/68‑1 (MQ=255) tCCAGCAACGCCTGATATGGCACATCTGCTGGGGAAAGAAGGCGATTACGGCAAGGATCTGAAGCTgg < 1:435420/68‑1 (MQ=255) ccAGCAACTCCTGATATGGAACATCTGCTGTGTAAAGAAGGCGATTACGGCTAGGATCTGAAGCTTGa < 1:744007/68‑1 (MQ=255) ccAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGa < 1:587212/68‑1 (MQ=255) ccAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGa < 2:682115/68‑1 (MQ=255) cAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGataat > 1:379373/1‑68 (MQ=255) aaCGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGataata > 1:282617/1‑68 (MQ=255) tGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATggg < 1:61701/68‑1 (MQ=255) gATATGGCACATCTGCTGTGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGc < 1:524741/68‑1 (MQ=255) gATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGc < 1:768135/68‑1 (MQ=255) atGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATggg < 1:136569/64‑1 (MQ=255) atGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATggg > 2:136569/1‑64 (MQ=255) cacaTCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAAc > 2:73206/1‑68 (MQ=255) cacaTCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAAc > 1:721170/1‑68 (MQ=255) ccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAAcatc > 1:226869‑M1/25‑68 (MQ=255) ccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAAcatc > 2:529869‑M1/25‑68 (MQ=255) ccaacaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAAcatc > 1:545195‑M1/25‑68 (MQ=255) aTCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAAcatc < 2:648164/68‑1 (MQ=255) tgctgGGAAAAGAATTCGATTACTTCAAGGTGCTGAAGCTGTATAATATATGGGACTATAACatcatc < 1:346789/68‑1 (MQ=255) acaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACatcatc > 2:787472‑M1/22‑68 (MQ=255) acaatgccgacaacagcaacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACatcatc > 2:220271‑M1/22‑68 (MQ=255) tgGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCaaa > 1:841934/1‑68 (MQ=255) tgGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCaaa > 1:454668/1‑68 (MQ=255) ggTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACa > 2:500412/1‑68 (MQ=255) ggTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACa < 2:139244/68‑1 (MQ=255) gTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAg > 2:134169/1‑68 (MQ=255) aaaGACGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGt < 1:686668/68‑1 (MQ=255) agaagGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTgg < 2:119202/68‑1 (MQ=255) agaagGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTgg < 1:421236/68‑1 (MQ=255) agaagGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTgg < 1:10393/68‑1 (MQ=255) gaagGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTggg < 1:711566/68‑1 (MQ=255) gaagGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTggg > 2:903725/1‑68 (MQ=255) gaagGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTggg > 1:616120/1‑68 (MQ=255) agGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTa > 2:260093/1‑68 (MQ=255) agGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTa > 1:413702/1‑68 (MQ=255) ggCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGt > 2:108452/1‑62 (MQ=255) ggCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGt < 1:108452/62‑1 (MQ=255) caacaACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAact < 1:497328‑M1/63‑1 (MQ=255) | GATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACT > NC_000913/3419827‑3419953 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |