| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3798325 | 28 (1.080) | 14 (0.570) | 4/126 | 2.0 | 32.7% | coding (988/1074 nt) | waaU | lipopolysaccharide core biosynthesis |
| ? | NC_000913 | = 3798516 | 31 (1.260) | coding (797/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
ACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3798257‑3798325‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAAGTATAGTGATTTTGTCATTTCTGTTGATA < NC_000913/3798516‑3798451 acaTAATCTCTTTACTGAATAAGTTAAAGTTTCAGTATCGATATCATTTACCGTATATGTTGGGGATA > 1:729921/4‑68acaTAAACTCTATACTGAAATAGTTAAAGTTTCAGTATCGATATCTATTACCGTATATGTTGGGGATA > 1:937693/4‑68ACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATA > 1:216310/1‑68ACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATA > 1:216311/1‑68ACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATA > 1:596608/1‑68 TATCGATATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGAC > 2:183870/1‑68 TCGATATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCA < 1:183870/68‑1 TCGATATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCA < 2:591610/68‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAAGTA > 2:626684/1‑68 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA > 2:768178/1‑65 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA < 2:656035/65‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA > 2:399146/1‑65 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA < 1:768181/65‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA > 1:656035/1‑65 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA < 1:399146/65‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCA < 1:50562/64‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCA > 2:413970/1‑64 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCA > 2:50562/1‑64 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCA < 1:413970/64‑1 ACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAAGTATAGTGATTTTGTCATTTCTGTTGATA > 1:433799/1‑68 ACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAAG < 2:315099/40‑1 ACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAAG > 1:315099/1‑40 ACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3798257‑3798325‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAAGTATAGTGATTTTGTCATTTCTGTTGATA < NC_000913/3798516‑3798451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |