| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3798325 | 28 (1.080) | 14 (0.570) | 4/126 | 2.0 | 32.7% | coding (988/1074 nt) | waaU | lipopolysaccharide core biosynthesis |
| ? | NC_000913 | = 3798516 | 31 (1.260) | coding (797/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
TTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGA > NC_000913/3798259‑3798391 | ttAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACt > 1:255018/1‑68 (MQ=255)ttAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACt > 2:546297/1‑68 (MQ=255) tAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTa < 2:905968/68‑1 (MQ=255) tAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTa < 2:905967/68‑1 (MQ=255) tAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTa < 1:881829/68‑1 (MQ=255) tAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTATTACCGTATATGTTGGGGATACTa < 1:916323/68‑1 (MQ=255) aTCTCTTTACTGATTTAGTTAAATCCTCAGTATCGATATCTTTTACCTTATATGCTGGGGATACTacc < 2:758949/68‑3 (MQ=255) ctctTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTg > 1:770003/1‑68 (MQ=255) ctctTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTg > 1:648165/1‑68 (MQ=255) tctTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGt < 2:255018/68‑1 (MQ=255) tctTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGt < 1:861899/68‑1 (MQ=255) aCTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGA < 2:5026‑M1/68‑1 (MQ=255) ttAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTatg > 2:845186/1‑68 (MQ=255) ttAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTAT > 2:420891‑M1/1‑63 (MQ=255) ttAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTAT < 1:420891‑M1/63‑1 (MQ=255) tATCGATATCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgac > 2:183870‑M1/1‑34 (MQ=255) aTCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCaaa < 1:546297/68‑1 (MQ=255) tCGATATCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgacca < 2:591610‑M1/68‑37 (MQ=255) tCGATATCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgacca < 1:183870‑M1/68‑37 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaagta > 2:626684‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 1:768181‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa > 2:768178‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 2:656035‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa > 1:656035‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 1:399146‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa > 2:399146‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgacca < 1:50562‑M1/64‑37 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgacca < 1:413970‑M1/64‑37 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgacca > 2:50562‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgacca > 2:413970‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATaccgttgcgttgaccaa < 1:465917‑M1/62‑18 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATaccgttgcgttgaccaa > 2:465917‑M1/1‑45 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTaaa > 1:915428/1‑68 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTaaa > 2:824949/1‑68 (MQ=255) tCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATg > 1:483399/1‑68 (MQ=255) cTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGc < 2:596608/68‑1 (MQ=255) aCCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAggg > 1:39274/1‑68 (MQ=255) cGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGat > 1:720991/1‑68 (MQ=255) cGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGat > 1:957560/1‑68 (MQ=255) cGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGat > 1:555742/1‑68 (MQ=255) cGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGat < 1:845189/68‑1 (MQ=255) tGTTGGGGATACTATTTGTATAGATTTATaccgttgcgttgacca < 1:219243‑M1/45‑17 (MQ=255) tGTTGGGGATACTATTTGTATAGATTTATaccgttgcgttgacca > 2:219243‑M1/1‑29 (MQ=255) tGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCg > 1:504024/1‑68 (MQ=255) gTTGGGGATACTATTTGTATAGATTTATaccgttgcgttgaccaa < 2:144642‑M1/45‑18 (MQ=255) gTTGGGGATACTATTTGTATAGATTTATaccgttgcgttgaccaa > 1:144642‑M1/1‑28 (MQ=255) ggggATACTATTTGTATTGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGt > 1:694334/1‑68 (MQ=255) ggggATACTATTTGTATAGATTTATGATGATTCGGGGACCATATTAAATGCGAGGGATATTCCGGAGt < 2:46072/68‑1 (MQ=255) ggggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGt < 2:584824/68‑1 (MQ=255) ggggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGt < 2:544915/68‑1 (MQ=255) ggggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGt < 2:134271/68‑1 (MQ=255) aCcatttgatgagtttatttataccgttgcgttgaccaagtatagtgattttgtcatttctgttgata > 1:433799‑M1/1‑2 (MQ=255) aCcatttgatgagtttatttataccgttgcgttgaccaag > 1:315099‑M1/1‑2 (MQ=255) aCcatttgatgagtttatttataccgttgcgttgaccaag < 2:315099‑M1/40‑39 (MQ=255) | TTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGA > NC_000913/3798259‑3798391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |