| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3798325 | 28 (1.080) | 14 (0.570) | 4/126 | 2.0 | 32.7% | coding (988/1074 nt) | waaU | lipopolysaccharide core biosynthesis |
| ? | NC_000913 | = 3798516 | 31 (1.260) | coding (797/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
TGTATCAACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAATATAAT > NC_000913/3798449‑3798580 | tGTATCAACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATg < 2:555742/68‑1 (MQ=255)tGTATCAACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATg < 2:277396/68‑1 (MQ=255) tATCAACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGgt > 1:433799‑M2/1‑66 (MQ=255) aCAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAgtgt < 2:216311/68‑1 (MQ=255) aCAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAgtgt < 2:216310/68‑1 (MQ=255) cAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGtt > 1:91392/1‑68 (MQ=255) aaTGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGa < 1:441018/68‑1 (MQ=255) aaTGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGa < 1:456146/68‑1 (MQ=255) aaaTCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAg > 2:595985/1‑68 (MQ=255) aaTCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAACGGCAGTGTTTCGACTTCAAgt < 2:694334/68‑1 (MQ=255) taCTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 2:626684‑M2/1‑40 (MQ=255) taCTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAgtaatggtat > 2:957088/1‑68 (MQ=255) aCTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAgtattggtatt > 2:597973/1‑68 (MQ=255) cTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGgt < 2:315099‑M2/40‑3 (MQ=255) cTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGgt > 1:315099‑M2/1‑38 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 1:399146‑M2/65‑29 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 2:399146‑M2/1‑37 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 1:768181‑M2/65‑29 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 2:656035‑M2/65‑29 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 1:656035‑M2/1‑37 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 2:768178‑M2/1‑37 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGt > 1:783304/1‑68 (MQ=255) tGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagatatcga < 1:183870‑M2/68‑33 (MQ=255) tGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagatatcga < 2:591610‑M2/68‑33 (MQ=255) tGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 2:50562‑M2/1‑36 (MQ=255) tGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 2:413970‑M2/1‑36 (MQ=255) tGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 1:413970‑M2/64‑29 (MQ=255) tGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 1:50562‑M2/64‑29 (MQ=255) ggTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCa < 1:597973/68‑1 (MQ=255) gTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagatatcgata > 2:183870‑M2/1‑34 (MQ=255) cgcaacgGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAAt > 2:638307/1‑68 (MQ=255) cgGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATATATCTTGc < 1:681319/68‑1 (MQ=255) ggTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCg > 2:389406/1‑68 (MQ=255) aataaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAAcc > 2:415204/1‑68 (MQ=255) aataaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAAcc < 2:469176/68‑1 (MQ=255) ataaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAAccc > 2:920374/1‑68 (MQ=255) taaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCg > 2:272073/1‑68 (MQ=255) taaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCg > 2:862303/1‑68 (MQ=255) taaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCg > 1:283566/1‑68 (MQ=255) aaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCgg < 1:365773/68‑1 (MQ=255) aaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCgg < 1:908645/68‑1 (MQ=255) aaaCTCATCAAATGGCAGTGTTTCGATTCCAAGTATTGGTATTGTCAATAAATCTCGCGGTAACCCgg < 2:274415/68‑1 (MQ=255) aaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGt > 2:623331/1‑68 (MQ=255) aCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCgg < 1:177360/66‑1 (MQ=255) aCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCgg > 2:177360/1‑66 (MQ=255) aCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTa > 1:44031/1‑68 (MQ=255) aCTCATCAAATGGTAGTGTATCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTa > 1:616854/1‑68 (MQ=255) catcaAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAat < 1:735900/68‑1 (MQ=255) catcaAATGGTAGTGTTTCGATTTCAAGTATAGGAATTGTCAATAAATCTTGCGGTAACCCGGTAAat < 1:501116/68‑1 (MQ=255) aaTGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAATATAAt < 2:417612/68‑1 (MQ=255) | TGTATCAACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAATATAAT > NC_000913/3798449‑3798580 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |