New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1341858 =	14 (0.540)	5 (0.210)	4/124	2.0	24.9%	intergenic (+131/‑63)	yciM/pyrF	LPS regulatory protein; putative modulator of LpxC proteolysis/orotidine‑5'‑phosphate decarboxylase
	?	NC_000913	1341945 =	17 (0.700)					coding (25/738 nt)	pyrF	orotidine‑5'‑phosphate decarboxylase

GACCAGACCTTCTTGATGATGGGCACCGGAAGTGGCGCGAAACAGGTAAACGGCGAGCATTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1341920‑1341858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctTCCCGCGCTGTTACGAATTCTCC  >  NC_000913/1341945‑1341967                                                                                        GACCAGACCTTCTTGATGATGGGCACCGGAAGTGGCGCGAAACAGGTAAACGGCGAGCATTCTTCCCG                    >  1:745998/1‑68 GACCAGACCTTCTTGATGATGGGCACCGGAAGTGGCGCGAAACAGGTAAACGGCGAGCATTCTTCACG                    >  2:307850/1‑68  ACCAGACCTTCTTGATGATGGGCACCGGAAGTGGCGAGAAACAGGTAAACGGCGAGCATTCTTCCCGC                   >  2:972201/1‑68                  GATGGGCACCGGAAGTGGCGCGAAACAGGTAAACGGCGAGCATTCTTCCCGCGCTGTTACGAATTCTC   <  1:972204/68‑1                   ATGGGCACCGGAAGTGGCGCGAAACAGGTAAACGGCGAGCATTCTTCCCGCGCTGTTACGAATTCTCC  <  2:745996/68‑1                                                                                        GACCAGACCTTCTTGATGATGGGCACCGGAAGTGGCGCGAAACAGGTAAACGGCGAGCATTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1341920‑1341858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctTCCCGCGCTGTTACGAATTCTCC  >  NC_000913/1341945‑1341967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.