| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1341858 = | 14 (0.540) | 5 (0.210) | 4/124 | 2.0 | 24.9% | intergenic (+131/‑63) | yciM/pyrF | LPS regulatory protein; putative modulator of LpxC proteolysis/orotidine‑5'‑phosphate decarboxylase |
| ? | NC_000913 | 1341945 = | 17 (0.700) | coding (25/738 nt) | pyrF | orotidine‑5'‑phosphate decarboxylase | |||||
ACGGCGCAGAAAAAGCCTGCCAGGGGAGAAATCGCAACTGTTAATTTTTTATTTCCACGGGTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCCATCATCAAGAAGGTCTGGTCATG > NC_000913/1341796‑1341923 | acgGCGCAGAAAAAGCCTGCCAGGGGAGAAATCGCAACTGTTAATTTTTTATATCCACGGGAAGCATg > 2:549328/1‑68 (MQ=255) tCGCAACTGTTAATTTTTTATTTCCACGGGTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCg > 1:561008/1‑68 (MQ=255) tCGCAACTGTTAATTTTTTATTTCCACGGGTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCg > 2:688534/1‑68 (MQ=255) aCTGTTAATTTTTTATTTCCACGGGTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGcc > 1:126760/1‑68 (MQ=255) ggagaattcgtaacagcgcgggaAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCcat < 2:745996‑M1/45‑1 (MQ=255) ttAATTTTTTATTTCCACGGGTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCcatc < 2:880233/68‑1 (MQ=255) gagaattcgtaacagcgcgggaAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCcatc < 1:972204‑M1/46‑1 (MQ=255) tAATTTTTTATTTCCACGGGTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCcatca < 1:67904/68‑1 (MQ=255) tAATTTTTTATTTCCACGGGTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCcatca < 2:126760/68‑1 (MQ=255) caaTTTTTTATTTCCACGGGGAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGCGCCcatca < 2:840293/67‑1 (MQ=255) ttttttATTTCCACGGGTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCCAtcatca > 2:253824/1‑68 (MQ=255) ttttttATTTCCACGGGTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCCAtcatca > 2:253825/1‑68 (MQ=255) tttttATTTCCACGTGTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGTTGCCCATCATCaa < 1:928730/68‑1 (MQ=255) cACGGGTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCCATCATCAAGAAGGTCTgg < 2:679503/68‑1 (MQ=255) gcgggaAGAATGCTCGCCGTTTACCTGTTTCTCGCCACTTCCGGTGCCCATCATCAAGAAGGTCTGGt > 2:972201‑M1/7‑68 (MQ=255) cgtgaAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCCATCATCAAGAAGGTCTGGTc > 2:307850‑M1/6‑68 (MQ=255) cgggaAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCCATCATCAAGAAGGTCTGGTc > 1:745998‑M1/6‑68 (MQ=255) gggTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCCATCATCAAGAAGGTCTGGTCa < 2:798796/68‑1 (MQ=255) gTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCCATCATCAAGAAGGTCTGGTCATg > 2:694879/1‑68 (MQ=255) | ACGGCGCAGAAAAAGCCTGCCAGGGGAGAAATCGCAACTGTTAATTTTTTATTTCCACGGGTAGAATGCTCGCCGTTTACCTGTTTCGCGCCACTTCCGGTGCCCATCATCAAGAAGGTCTGGTCATG > NC_000913/1341796‑1341923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |