| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1466676 = | 14 (0.540) | 6 (0.260) | 3/116 | 2.2 | 22.1% | pseudogene (1285/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| ? | NC_000913 | 1466937 = | 30 (1.320) | pseudogene (1546/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 | |||||
TCGCCGTCCTGAATCACCTTCCCGTTATTGCCAGCAATTTCCGTACCGGTGGAATCCTTGCCGTCAACGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1466746‑1466676‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaacggtAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAA > NC_000913/1466937‑1467001 TCGCCGTCCTGAATCACCTTCCCGTTATTGCCAGCAATTTCCGTACCGGTGGAATCCTTGCCGTCAAC < 1:238058/68‑1 GTTATTGCCAGCAATTTCCGTACCGGTGGAATCCTTGCCGTCAACGGTAACGACGCCACCGCGAATAA > 2:949503/1‑68 GTTATTGCCAGCAATTTCCGTACCGGTGGAATCCTTGCCGTCAACGGTAACGACGCCACCGC < 1:227532/62‑1 GTTATTGCCAGCAATTTCCGTACCGGTGGAATCCTTGCCGTCAACGGTAACGACGCCACCGC < 1:526286/62‑1 GTTATTGCCAGCAATTTCCGTACCGGTGGAATCCTTGCCGTCAACGGTAACGACGCCACCGC > 2:227532/1‑62 GTTATTGCCAGCAATTTCCGTACCGGTGGAATCCTTGCCGTCAACGGTAACGACGCCACCGC > 2:526286/1‑62 GCCAGCAATTTCCGTACCGGTGGAATCCTTGCCGTCAACGGTAACGACGCCACCGCGAATAACAGTGG < 1:949506/68‑1 TCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGT > 1:351992/1‑68 CAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTA < 1:185853/68‑1 AACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTAC < 2:825862/68‑1 ACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACC > 2:284038/1‑68 ACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACC > 2:337182/1‑68 ACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACC > 2:650906/1‑68 GGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAA > 2:741065/1‑68 GGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAA > 2:799894/1‑68 TCGCCGTCCTGAATCACCTTCCCGTTATTGCCAGCAATTTCCGTACCGGTGGAATCCTTGCCGTCAACGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1466746‑1466676‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaacggtAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAA > NC_000913/1466937‑1467001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |