| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1466676 = | 14 (0.540) | 6 (0.260) | 3/116 | 2.2 | 22.1% | pseudogene (1285/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| ? | NC_000913 | 1466937 = | 30 (1.320) | pseudogene (1546/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 | |||||
CCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGAT > NC_000913/1466611‑1466734 | ttggtacccgtggaatcttttccatcaacagtggtttttccactgttattcgcggtggcgtcgttAcc > 2:799894‑M1/66‑68 (MQ=255)ttggtacccgtggaatcttttccatcaacagtggtttttccactgttattcgcggtggcgtcgttAcc > 2:741065‑M1/66‑68 (MQ=255) ggtacccgtggaatcttttccatcaacagtggtttttccactgttattcgcggtggcgtcgttACCGt > 2:650906‑M1/64‑68 (MQ=255) ggtacccgtggaatcttttccatcaacagtggtttttccactgttattcgcggtggcgtcgttACCGt > 2:337182‑M1/64‑68 (MQ=255) ggtacccgtggaatcttttccatcaacagtggtttttccactgttattcgcggtggcgtcgttACCGt > 2:284038‑M1/64‑68 (MQ=255) gtacccgtggaatcttttccatcaacagtggtttttccactgttattcgcggtggcgtcgttACCGtt < 2:825862‑M1/6‑1 (MQ=255) tacccgtggaatcttttccatcaacagtggtttttccactgttattcgcggtggcgtcgttACCGTTg < 1:185853‑M1/7‑1 (MQ=255) cGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTg > 1:605890/1‑68 (MQ=40) ggTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGa > 2:360319/1‑68 (MQ=40) acccgtggaatcttttccatcaacagtggtttttccactgttattcgcggtggcgtcgttACCGTTGa > 1:351992‑M1/61‑68 (MQ=255) tGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACg > 1:27609/1‑68 (MQ=40) tGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACg > 1:130583/1‑68 (MQ=40) ttAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGt < 1:689705/68‑1 (MQ=35) gaCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGc < 1:833222/68‑1 (MQ=35) cGCCACGGCAAACAACAACGGCAAACCCACCGTTGAAGGCAAGGATTCCACCGGTACGAAAATAGCTg > 2:119913/1‑68 (MQ=11) ccactgttattcgcggtggcgtcgttACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGc < 1:949506‑M1/42‑1 (MQ=255) ttattcgcggtggcgtcgttACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAAc > 2:949503‑M1/21‑68 (MQ=255) aacaatGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGaa > 1:302471/1‑68 (MQ=255) gcggtggcgtcgttACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAAc > 2:227532‑M1/15‑62 (MQ=255) gcggtggcgtcgttACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAAc < 1:526286‑M1/48‑1 (MQ=255) gcggtggcgtcgttACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAAc > 2:526286‑M1/15‑62 (MQ=255) gcggtggcgtcgttACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAAc < 1:227532‑M1/48‑1 (MQ=255) acaatGGCAAAACCACCGTTGACGGAAAAGATTCCACCGGTACGGAAATAGCAGGAAATAACGGGAAg > 2:434672/1‑68 (MQ=11) acaacGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAg < 1:383876/68‑1 (MQ=255) acaacGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAg < 1:276424/68‑1 (MQ=255) cGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGa < 2:621734/68‑1 (MQ=255) cGGCAAAACCACCGTTGACGGCAAGGACTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGa < 2:256794/68‑1 (MQ=255) ggCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGAt > 1:875631/1‑68 (MQ=255) | CCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGAT > NC_000913/1466611‑1466734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |