| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1466676 = | 14 (0.540) | 6 (0.260) | 3/116 | 2.2 | 22.1% | pseudogene (1285/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| ? | NC_000913 | 1466937 = | 30 (1.320) | pseudogene (1546/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 | |||||
GGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAA > NC_000913/1466870‑1467001 | ggCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTa > 1:883194/1‑68 (MQ=255)ggCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTa < 1:518718/68‑1 (MQ=255) cGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAacgacg < 2:284106/68‑1 (MQ=255) cGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAacgacg > 2:153504/1‑68 (MQ=255) tCAATAACGAAGGCGAGAGCTCTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGcc < 1:847547/68‑1 (MQ=255) aaTAACGAAGTCGAGAGCTCTATCACCTATGGCGGCACCGGCACTCATATCAACTGTAACGACGCCAc < 2:421153/68‑1 (MQ=21) aaCTAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACcgc < 1:619525/68‑1 (MQ=255) aaCGAAGGCGAGAGCTCTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACcgc < 1:929431/68‑1 (MQ=255) aaCGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACcgc < 1:375641/68‑1 (MQ=255) aaCGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACcgc < 1:956350/68‑1 (MQ=255) aaCGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACcgc < 1:393540/68‑1 (MQ=255) aaCGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACcgc > 2:331266/1‑68 (MQ=255) aaCGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACcgc < 1:19447/68‑1 (MQ=255) aaCGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACcgc < 1:15474/68‑1 (MQ=255) aCGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACcgcg > 2:880691/1‑68 (MQ=255) gttattgccagcaatttccgtaccggtggaatccttgccgtcaacggtAACGACGCCACcgc > 2:227532‑M2/49‑62 (MQ=255) gttattgccagcaatttccgtaccggtggaatccttgccgtcaacggtAACGACGCCACcgc < 1:526286‑M2/14‑1 (MQ=255) gttattgccagcaatttccgtaccggtggaatccttgccgtcaacggtAACGACGCCACcgc < 1:227532‑M2/14‑1 (MQ=255) gttattgccagcaatttccgtaccggtggaatccttgccgtcaacggtAACGACGCCACcgc > 2:526286‑M2/49‑62 (MQ=255) gttattgccagcaatttccgtaccggtggaatccttgccgtcaacggtAACGACGCCACCGCGAATaa > 2:949503‑M2/49‑68 (MQ=255) gagCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTg < 2:451917/68‑1 (MQ=255) gccagcaatttccgtaccggtggaatccttgccgtcaacggtAACGACGCCACCGCGAATAACAGTgg < 1:949506‑M2/26‑1 (MQ=255) agCACTATATCCAACGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTgg < 1:213453/68‑1 (MQ=25) aaTCACCAATGGCGGCACCGGCACTCAGATCTACGTTAACGACGCCACCGCGAATAACAGTGGaaaaa < 2:530926/67‑1 (MQ=255) cACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCa > 2:507093/1‑68 (MQ=255) cAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTg > 2:758864/1‑68 (MQ=255) aTGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTg > 1:790074/1‑54 (MQ=255) aTGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTg < 2:790071/54‑1 (MQ=255) cggcaccggcacTCAGATCAACGGTAACGACGCCACCGCGAATTACAGTGGAAAAACCGCTGTTGATg > 1:261540/1‑68 (MQ=255) cggcaccggcacTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATg > 1:223052/1‑68 (MQ=255) cggcaccggcacTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATg > 2:225416/1‑68 (MQ=255) cggcaccggcacTCAGATCAACGGTAACGACGCCACCGCGAATAACAGAGGAAAAAACACTGTTGATg > 1:325255/1‑68 (MQ=255) accggcacTCAGATAAACGGTAAAGACGCCACCGCGAAAAACAGAGGAAAAACCACAGTTGAAGGaaa > 2:23892/1‑68 (MQ=255) cacTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGAtt > 1:181902/1‑68 (MQ=255) tCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGaa > 2:426991/1‑59 (MQ=255) tCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGaa < 1:426991/59‑1 (MQ=255) tcaacggtAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGt > 1:351992‑M2/9‑68 (MQ=255) caacggtAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTa < 1:185853‑M2/61‑1 (MQ=255) aacggtAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTAc < 2:825862‑M2/62‑1 (MQ=255) acggtAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTAcc > 2:337182‑M2/6‑68 (MQ=255) acggtAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTAcc > 2:284038‑M2/6‑68 (MQ=255) acggtAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTAcc > 2:650906‑M2/6‑68 (MQ=255) ggtAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCaa > 2:741065‑M2/4‑68 (MQ=255) ggtAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCaa > 2:799894‑M2/4‑68 (MQ=255) | GGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAA > NC_000913/1466870‑1467001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |