| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2236569 | 13 (0.500) | 3 (0.150) | 3/102 | 1.9 | 21.4% | noncoding (36/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 2236597 | 12 (0.600) | noncoding (64/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
ACCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGC > NC_000913/2236502‑2236635 | aCCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAA > 1:430941‑M1/1‑68 (MQ=255)aCCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAA > 1:193476‑M1/1‑68 (MQ=255) ccAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACaaa < 1:28206/68‑1 (MQ=255) ccAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACaaa < 1:43193/68‑1 (MQ=255) ccAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACaaa < 2:396957/68‑1 (MQ=255) cAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACaaaa > 1:864118/1‑68 (MQ=255) gaCGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCAt < 1:433182/68‑1 (MQ=255) aTTAGGTTCCTGTCTCCGGATGCTGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTAt < 1:723120/68‑1 (MQ=18) gTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAtaagctcaacatactgatttgta > 2:54648‑M1/1‑45 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAtaagctcaacatactgatttgtatg < 1:54648‑M1/68‑26 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 1:862429/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 2:613960/68‑1 (MQ=255) tCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGc < 2:271003/68‑1 (MQ=255) ggCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTAttgtaggccggat > 2:210206‑M2/1‑55 (MQ=255) aCGCCTTATCCGGCCTACAAAACCATACATATCAGTATGTTGAGCTTAttgtaggccggatatggcgt > 1:576921‑M2/1‑48 (MQ=255) aCGCCATATCCGGCCTACAAtaagctcaacatactgatatgtatggttttgtaggccggataaggcgt > 1:576921‑M1/1‑20 (MQ=255) cGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAAcgcg > 2:210274/1‑68 (MQ=255) cGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAAcgcg < 1:686892/68‑1 (MQ=255) aTCCGGCCTACAAtaagctcaacatactgatttgtatggttttgtaggccggataaggcgttcaagcc > 2:210206‑M1/1‑13 (MQ=255) cGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGACCGCGTTg > 2:771686/1‑68 (MQ=255) aaaaCCATACAAATCAGTATGTTGAGCCTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGc < 2:383562/68‑1 (MQ=255) | ACCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGC > NC_000913/2236502‑2236635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |