New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2236569	13 (0.500)	3 (0.150)	3/102	1.9	21.4%	noncoding (36/150 nt)	REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913	= 2236597	12 (0.600)					noncoding (64/150 nt)	REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences

GGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGC  >  NC_000913/2236543‑2236661                                                       |                                                                 ggCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTAttgtaggccggat                                                     >  2:210206‑M2/1‑55 (MQ=255)        aCGCCTTATCCGGCCTACAAAACCATACATATCAGTATGTTGAGCTTAttgtaggccggatatggcgt                                              >  1:576921‑M2/1‑48 (MQ=255)         cGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAAcgcg                                             <  1:686892/68‑1 (MQ=255)         cGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAAcgcg                                             >  2:210274/1‑68 (MQ=255)                  cGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGACCGCGTTg                                    >  2:771686/1‑68 (MQ=255)                          aaaaCCATACAAATCAGTATGTTGAGCCTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGc                            <  2:383562/68‑1 (MQ=255)                               cATACAAATCAGTATGTTGAGCTTAttgtaggccggataaggcgttcaagccgcatccggcgacagga                       <  1:54648‑M2/68‑44 (MQ=255)                                 tACAAATCAGTATGTTGAGCTTAttgtaggccggataaggcgttcaagccgcatccggcgacaggaac                     >  2:54648‑M2/1‑23 (MQ=255)                                       tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt               >  1:368117/1‑68 (MQ=255)                                       tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt               >  1:525933/1‑68 (MQ=255)                                       tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt               >  1:710806/1‑68 (MQ=255)                                            aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCg          >  1:433689/1‑68 (MQ=255)                                                   gCTTATTGTAGGCCGGATAAACCGCTCAAGCGTTGCATCCGGCATTTGGCTCCTGTTGCAGGATgcgg   >  2:378832/1‑68 (MQ=37)                                                   gCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcgg   >  1:147874/1‑68 (MQ=255)                                                   gCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcgg   >  2:208663/1‑68 (MQ=255)                                                    cTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcggc  <  1:570667/68‑1 (MQ=255)                                                       |                                                                 GGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGC  >  NC_000913/2236543‑2236661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.