| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1387098 | 20 (0.770) | 7 (0.300) | 3/120 | 2.3 | 33.2% | coding (379/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| ? | NC_000913 | = 1387248 | 10 (0.430) | coding (529/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase | |||||
GGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGA > NC_000913/1387031‑1387162 | ggCGAACCCGGCGAGCTGTCAGCTTTTTGGGCTAAAATTTGATCGCCTGCGCAACCATACCGCCGCAC < 1:770622‑M1/68‑1 (MQ=255) gCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCGACCATACCGCCGcaca > 2:727628/1‑68 (MQ=255) gCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGcaca < 1:524191/68‑1 (MQ=255) cccGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGa < 1:329550/68‑1 (MQ=255) cccGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGa < 2:121783/68‑1 (MQ=255) ccGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGAt > 2:316972/1‑68 (MQ=255) gCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGc < 1:900800/68‑1 (MQ=255) cTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAAttt > 2:910492/1‑68 (MQ=255) cTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAAttt < 1:910495/68‑1 (MQ=255) gggCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatc > 1:668464‑M1/1‑40 (MQ=255) gggCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACg > 1:740936/1‑68 (MQ=255) gggCAAAAATTGGATCGCCTGCGCAACAATACCTCCGCCCcggtcaggacgtgatgatcatattcatc > 1:668463‑M1/1‑40 (MQ=255) gCAAAAATTGTATCGCCTGCGCAACCTTACCTCCGCACcggtcaggacgtgttgatcattttcatcct < 1:31962‑M1/68‑31 (MQ=255) gCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcct < 1:605927‑M1/68‑31 (MQ=255) gCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgctgatcattttcatcct < 2:238687‑M1/68‑31 (MQ=255) ctaaaaTTGGATCTCCTGCTCAACCATACCGACGCACAATTGATTAACTGCTTTAATTTTTTACGttt < 1:57840/66‑2 (MQ=255) aaaaaTTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTgg < 2:210907/68‑1 (MQ=255) tCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcct > 2:402834‑M1/1‑26 (MQ=255) tCGCCTGCGCAACCATACCGCCGCACcggtcaggacgtgttgatcattttcatcct < 1:402834‑M1/56‑31 (MQ=255) cGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGa > 1:49875/1‑68 (MQ=255) cTGCGCATCCATACCGCCGCACAATTGATTATCGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAAcc < 2:485403/68‑1 (MQ=255) cTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAAca > 1:99356/1‑67 (MQ=255) aaCCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGa < 2:743209/68‑1 (MQ=255) attccgccgCACAATTGATTAACTGCTTTTATTTTTAACGTTGGCTTGAAAGCGAACCGCTAGATTCg < 2:98245/65‑1 (MQ=255) aCCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCa > 1:850502/1‑68 (MQ=255) aCCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCa < 2:66219/68‑1 (MQ=255) cgccgcACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATa > 1:225597/1‑68 (MQ=255) gcACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTTGAAAGCGAACCGCAAGATTCGCATAACGa < 1:944296/68‑1 (MQ=255) | GGCGAACCCGGCGAGCTGTCAGCTTTTTGGGCAAAAATTGGATCGCCTGCGCAACCATACCGCCGCACAATTGATTAACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGA > NC_000913/1387031‑1387162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |