New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1387098	20 (0.770)	7 (0.300)	3/120	2.3	33.2%	coding (379/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
	?	NC_000913	= 1387248	10 (0.430)					coding (529/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase

AGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCA  >  NC_000913/1387183‑1387312                                                                  |                                                                 aGAACTTCCTGATGTAGAGTACGCCTGTCTATCTTCAGGATGAAAATGTTCAACACTCCCTGACcggt                                                                <  2:129970/68‑1 (MQ=255)              ggAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGGCCGGTGCGGTGGTGATGt                                                   >  2:728571/1‑68 (MQ=255)                        ccTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAAc                                         >  1:636828/1‑68 (MQ=255)                         cTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACg                                        <  1:780239/68‑1 (MQ=255)                                tCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTa                                 >  1:579317/1‑68 (MQ=255)                                 cTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTAt                                >  1:806634/1‑68 (MQ=255)                                  ttCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGGGATCAACGATTCGTATg                               >  2:627541/1‑68 (MQ=255)                                     aGGATGAAAATGATCAGCACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgc                            <  2:238687‑M2/68‑39 (MQ=255)                                     aGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgc                            <  1:605927‑M2/68‑39 (MQ=255)                                     aGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcga                                        >  2:402834‑M2/1‑30 (MQ=255)                                     aGGATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcga                                        <  1:402834‑M2/56‑27 (MQ=255)                                     aGGATGAAAATGATCAACACGTCCTGACCGgtgcggaggtaaggttgcgcaggcgatacaatttttgc                            <  1:31962‑M2/68‑39 (MQ=255)                                       gATGAATATGATCATCACGTCCTGACCGgggcggaggtattgttgcgcaggcgatccaatttttgccc                          >  1:668463‑M2/1‑28 (MQ=255)                                       gATGAAAATGATCAACACGTCCTGACCGgtgcggcggtatggttgcgcaggcgatccaatttttgccc                          >  1:668464‑M2/1‑28 (MQ=255)                                                       acGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTc          >  2:288876/1‑68 (MQ=255)                                                           ccTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTcgccg      >  2:664444/1‑68 (MQ=255)                                                            cTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTcgccgc     <  1:419827/68‑1 (MQ=255)                                                               aCCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGcccg  >  2:471912/1‑67 (MQ=255)                                                                  |                                                                 AGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCA  >  NC_000913/1387183‑1387312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.