mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 330,734 | C→A | intergenic (‑1/‑257) | yahC ← / → yahD | putative inner membrane protein/ankyrin repeat protein |
| RA | 468,288 | A→T | K79* (AAG→TAG) | glnK → | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB |
| RA | 982,566 | C→A | intergenic (‑128/+475) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| JC JC | 2,400,257 | IS5 (+) +4 bp | intergenic (‑137/‑780) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| RA | 2,420,353 | A→T | intergenic (‑86/+135) | hisJ ← / ← argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| RA | 2,421,172 | A→C | D33E (GAT→GAG) | argT ← | lysine/arginine/ornithine transporter subunit |
| JC JC | 3,178,254 | IS5 (+) +4 bp | coding (56‑59/291 nt) | yqiC → | BMFP family putative fusogenic protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2084528 | 2085931 | 1404 | 95 [93] | [93] 94 | [hisG]–[hisC] | [hisG], hisD, [hisC] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 19796 = | NA (NA) | 160 (0.980) | 110/296 | 0.1 | 93.6% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | CP009273 | 3649844 = | 11 (0.070) | coding (257/333 nt) | hdeA | stress response protein acid‑resistance protein | |||||
| * | ? | CP009273 | 360104 = | NA (NA) | 229 (1.410) | 138/296 | 0.0 | NA | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 3576788 = | NA (NA) | 164 (1.010) | 102/296 | 0.3 | 97.0% | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA |
| ? | CP009273 | = 3649852 | 5 (0.030) | coding (249/333 nt) | hdeA | stress response protein acid‑resistance protein | |||||