mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 75 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 51 (0.630) | 16 (0.220) | 13/264 | 6.8 | 26.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 42 (0.580) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 2298015 | 161 (1.980) | 11 (0.140) | 9/290 | 9.3 | 8.4% | noncoding (120/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | = 2298152 | 82 (1.030) | noncoding (257/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | CP009273 | = 2298015 | 161 (1.980) | 12 (0.150) | 8/290 | 9.8 | 9.9% | noncoding (120/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | = 2298378 | 61 (0.770) | noncoding (483/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | CP009273 | = 4225506 | 81 (1.000) | 6 (0.080) | 6/278 | 10.6 | 7.3% | intergenic (+171/‑328) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| ? | CP009273 | = 4225511 | 76 (1.000) | intergenic (+176/‑323) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | CP009273 | = 270406 | NA (NA) | 10 (0.130) | 6/288 | 10.9 | NA | noncoding (201/335 nt) | IS911 | repeat region |
| ? | CP009273 | = 270438 | NA (NA) | noncoding (233/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | = 3527855 | 71 (0.870) | 6 (0.080) | 5/274 | 11.1 | 8.0% | intergenic (+56/+20) | pck/envZ | phosphoenolpyruvate carboxykinase/sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | CP009273 | = 3527861 | 73 (0.970) | intergenic (+62/+14) | pck/envZ | phosphoenolpyruvate carboxykinase/sensory histidine kinase in two‑component regulatory system with OmpR | |||||
| * | ? | CP009273 | = 4105581 | 102 (1.260) | 6 (0.080) | 5/280 | 11.3 | 5.9% | intergenic (‑74/+61) | glpX/glpK | fructose 1,6‑bisphosphatase II/glycerol kinase |
| ? | CP009273 | = 4105585 | NA (NA) | intergenic (‑78/+57) | glpX/glpK | fructose 1,6‑bisphosphatase II/glycerol kinase | |||||
| * | ? | CP009273 | = 3245381 | 78 (0.960) | 5 (0.070) | 5/280 | 11.3 | 6.2% | intergenic (+12/‑282) | yqjG/yhaH | putative S‑transferase/DUF805 family inner membrane protein |
| ? | CP009273 | = 3245385 | 77 (1.000) | intergenic (+16/‑278) | yqjG/yhaH | putative S‑transferase/DUF805 family inner membrane protein | |||||
| * | ? | CP009273 | = 1422521 | NA (NA) | 26 (0.330) | 5/284 | 11.4 | 84.4% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | CP009273 | = 2060347 | 5 (0.060) | noncoding (488/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 1390788 = | NA (NA) | 25 (0.320) | 5/284 | 11.4 | NA | coding (456/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | CP009273 | = 1422521 | NA (NA) | noncoding (531/1196 nt) | IS5 | repeat region | |||||