mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,138,811 | T→C | D338G (GAC→GGC) | rne ← | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
| RA | 2,739,137 | C→A | W47C (TGG→TGT) | rimM ← | 16S rRNA processing protein |
| RA | 3,178,277 | G→T | E27* (GAA→TAA) | yqiC → | BMFP family putative fusogenic protein |
| RA | 4,048,586 | A→T | V18E (GTG→GAG) | glnG ← | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| RA | 4,546,084 | G→T | H18Q (CAC→CAA) | yjiC ← | uncharacterized protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 1836576 | 1837994 | 1419 | 28 [27] | [27] 28 | gdhA | gdhA |
| * | * | ÷ | CP009273 | 3347939 | 3352560 | 4622 | 28 [27] | [27] 29 | gltB–[gltD] | gltB, [gltD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | NA (NA) | 100 (1.600) | 76/292 | 0.0 | NA | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 1973060 = | 4 (0.060) | 56 (0.900) | 40/292 | 0.7 | 93.3% | intergenic (‑606/‑174) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | = 3577555 | NA (NA) | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E | |||||
| * | ? | CP009273 | = 1973068 | 1 (0.020) | 68 (1.090) | 56/292 | 0.1 | 98.6% | intergenic (‑614/‑166) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | 3576788 = | NA (NA) | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||