Predicted mutation
evidence seq id position mutation freq annotation gene description
JC CP009273 3,676,833 Δ3 bp 91.2% intergenic (‑26/+155) dctA ← / ← yhjK C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 36768328 (0.350)78 (3.370) 57/268 NT 91.2% intergenic (‑25/+158) dctA/yhjK C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase
?CP009273 3676836 = 7 (0.300)intergenic (‑29/+154) dctA/yhjK C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase

CGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGT  >  CP009273/3676690‑3676973
                                                                                                                                              |                                                                                                                                             
cGTCGCCATGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGtt                                                                                                                                             <  2:31631‑M1/145‑3 (MQ=255)
  tcgcgaaggcggttCAGTTGCTGGCGTATTTCAGGATAGAAATGGCGAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGTGGTTTTCATAGGGTGTCCTTTCGTAAAACCACAGGTCt                                                                                                                                           <  1:345894/133‑1 (MQ=255)
  tCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgt                                                                                                                                           >  1:63573‑M1/1‑141 (MQ=255)
   cGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGCGTCCTTTAGTAAAACCACAGttgta                                                                                                                                          <  2:211642‑M1/145‑6 (MQ=255)
     ctaagcGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGACCTTTAGTAAAACCACAGttgtaag                                                                                                                                        <  2:211601‑M1/143‑8 (MQ=255)
     ccAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGCGGTTTTCATAGGGTGTCCTTTATTAAAACCACAGttgtaag                                                                                                                                        >  2:375933‑M1/1‑138 (MQ=255)
      cAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAAGGTGTCCTTTAGTAAAACCACAGGTCTTGTa                                                                                                                                       >  1:311103/1‑145 (MQ=255)
      cAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATCGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaagg                                                                                                                                       <  2:285909‑M1/145‑9 (MQ=255)
           ggTTTCATTTGCTCGCCTATTTCAGTATAGAAATTGCCAAGGGGAATACCAATGGCTATCGCTGTCAGGATCTGAAAGTAAAGGCTTTCAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatg                                                                                                                                  <  2:166155‑M1/145‑14 (MQ=255)
            ttttcggttgctcgccGATTTCAGGATAGAAATGGGCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatgg                                                                                                                                 <  1:137709‑M1/138‑15 (MQ=255)
             tttCATTTGCTCGCCTATTTCAGGATAGCAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggg                                                                                                                                <  1:238108‑M1/145‑16 (MQ=255)
             tttCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGCATACCAATGGCTCTCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAAGGTGTCCCTTAGTAAAACCACAGtagtaaggttatggg                                                                                                                                >  2:410319‑M1/1‑130 (MQ=255)
             tttCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTTTCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTGTTCATAGGGTGTCCTTTAGTCAAAGCACAGttgcaagtaaatggg                                                                                                                                >  2:220032‑M1/1‑130 (MQ=255)
             tttCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTCACGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGCTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggg                                                                                                                                >  2:330404‑M1/1‑130 (MQ=255)
             tttCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCAAAGatgtaaggttatggg                                                                                                                                >  1:136134‑M1/1‑130 (MQ=255)
             tttCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCATTTAGTAAAAGCACAGgtgtcaggttatggg                                                                                                                                >  1:401700‑M1/1‑130 (MQ=255)
               tCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTACTTTAGTAAAACCACAGttgtaaggttatggggt                                                                                                                              >  2:108771‑M1/1‑128 (MQ=255)
                 aTTTGCTCGCCTATTTCAGGATCGAAATGGCCAAGGAGAATACCGAGGGCTATCGCTGTCAGGACCCGAAAGTAAAGGCTTTTAAACAGAGGGGTTTTCATATGAAGTCCTGTAGTAGTACCACA‑‑TTTGTAAGGTTATGGGGTAc                                                                                                                         <  1:281255/145‑1 (MQ=255)
                 aTTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAAGGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtac                                                                                                                            <  1:143525‑M1/145‑20 (MQ=255)
                   ttGCTCGTCTATTTCAGGATAGAAATGGGCAAGGAGAATACCAGTGGCTATTGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacct                                                                                                                          <  2:61364‑M1/145‑22 (MQ=255)
                   ttGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacct                                                                                                                          <  2:61358‑M1/145‑22 (MQ=255)
                      ctctCCTTTTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcg                                                                                                                       <  2:128760‑M1/145‑25 (MQ=255)
                      cTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcg                                                                                                                       >  1:239475‑M1/1‑121 (MQ=255)
                             aTTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaa                                                                                                                <  1:67357‑M1/145‑32 (MQ=255)
                              tttCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGGAGAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAAACACAGttgtaaggttatggggaaccggcgcacttaaa                                                                                                               >  2:399100‑M1/1‑113 (MQ=255)
                              cttCAGGAAAGAAATGGCGAAGGAGAACACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGGTTATGGGGTACCTGCGGCCtt                                                                                                               <  1:394951/144‑1 (MQ=255)
                                  cgtatagAAATGGGCAAGGAGAATACCAATGGTTATTGCTGTCAGGACCTTAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataa                                                                                                           <  2:52066‑M1/142‑37 (MQ=255)
                                  aGGTTAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataa                                                                                                           <  1:4690‑M1/145‑37 (MQ=255)
                                    gATAGAAATGGCCAAGGAGAATACCAGTGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataaca                                                                                                         <  2:184804‑M1/145‑39 (MQ=255)
                                          aaTGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccaga                                                                                                   >  2:94329‑M1/1‑101 (MQ=255)
                                             ggCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaa                                                                                                <  2:356111‑M1/145‑48 (MQ=255)
                                              gCCAAGGAGAATACCGAGGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGGTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaac                                                                                               >  1:19775‑M1/1‑97 (MQ=255)
                                               ccAAGGAGAAGACCAATGGCTATCGCTGTCAGGACCGGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGGGTCCTGTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaaca                                                                                              <  2:62138‑M1/145‑50 (MQ=255)
                                                cAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACATAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGacaa                                                                                             >  2:399464/1‑145 (MQ=255)
                                                cAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacat                                                                                             >  2:316479‑M1/1‑95 (MQ=255)
                                                cAAGGAGAATACCAATGGCTATCGCTGTAAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTATCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacat                                                                                             >  2:316502‑M1/1‑95 (MQ=255)
                                                 aaGGAGAATACCAATGGCTATCGCTGTCAGGCCCAGAAAGTAACGGCTTGTAAACAGAGAGGTGTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggcacctgcggccttaaaataacacccagacaccatc                                                                                            >  1:196298‑M1/1‑94 (MQ=255)
                                                  aGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatca                                                                                           <  2:398708‑M1/145‑53 (MQ=255)
                                                  aGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGGTTATGGGGTACCTGCAGCCTTAAAATAACACCCAGccacca                                                                                           >  2:377792/1‑145 (MQ=255)
                                                    gagaATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcaca                                                                                         <  1:345054‑M1/145‑55 (MQ=255)
                                                    gagaATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacccgcggccttaaaataacacccagacaacatcaca                                                                                         >  1:249923‑M1/1‑91 (MQ=255)
                                                    gagaATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTGTCATAGGGTGTCCTTTAGTAAAACCACAGtggtaaggttatggggtacctgcggccttaaaataacacccagacaccatcaca                                                                                         >  1:11721‑M1/1‑91 (MQ=255)
                                                     agaATACCAATGACTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacag                                                                                        <  1:109666‑M1/145‑56 (MQ=255)
                                                       aaTAACAATGGCTAGCGGTGTCAGTACCGGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGCAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaa                                                                                      <  2:362131‑M1/145‑58 (MQ=255)
                                                               tGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacct                                                                              >  1:50180‑M1/1‑80 (MQ=255)
                                                               tGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaaggtacct                                                                              >  1:150653‑M1/1‑80 (MQ=255)
                                                                  cTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctgga                                                                           <  1:195087‑M1/145‑69 (MQ=255)
                                                                   tATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggat                                                                          <  2:35584‑M1/145‑70 (MQ=255)
                                                                   tATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataaaacccagacaccatcacgggaatgtacctggat                                                                          >  1:328387‑M1/1‑76 (MQ=255)
                                                                     tCGCTGACAGGACCTGAAATGAAAGGCCTTTAAACAGATAGGTTTTCATCGTGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatca                                                                        <  2:297572‑M1/145‑72 (MQ=255)
                                                                      cGCTGTCAGGACCTGAAAGTAAAGGCTTTAAAACAGAGAGGTTTTCATAGGGTGTCCTTGAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacaccccgacaacatcccagaaatgtacctgggacat                                                                       >  2:257710‑M1/1‑73 (MQ=255)
                                                                         tGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGATTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttattgggtacctgctgacttaaaataacacgcagacaacataccagaaatgtacctgcagcataat                                                                    >  1:12700‑M1/1‑70 (MQ=255)
                                                                           tCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattg                                                                  <  1:306330‑M1/145‑78 (MQ=255)
                                                                            cAGGACGTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcattattga                                                                 <  1:297201‑M1/145‑79 (MQ=255)
                                                                            cAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccaaacaacatcacagaaatgtacctggatcataattga                                                                 <  1:119137‑M1/145‑79 (MQ=255)
                                                                                   tGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaa                                                          >  2:348660‑M1/1‑60 (MQ=255)
                                                                                    gAAAGTAAAGGCTTTTAAACAGAGAGGGTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaa                                                         <  2:367344‑M1/145‑87 (MQ=255)
                                                                                        gTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggtt                                                     >  2:380704‑M1/1‑55 (MQ=255)
                                                                                             ggtttttaaaCAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaa                                                <  2:260913‑M1/142‑96 (MQ=255)
                                                                                              gCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaag                                               >  1:93182‑M1/1‑49 (MQ=255)
                                                                                                ttttAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggataaaaagtt                                             >  1:159924‑M1/1‑47 (MQ=255)
                                                                                                ttttAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGatgtcaggttgtggggtacctgcggctttcaaatcacacccagacaacatcacagcaaagtaactggatcataatggaaacaaacaggttaaaaagtt                                             >  1:407082‑M1/1‑47 (MQ=255)
                                                                                                ttttAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAGCAAACAGGTTaaaaa                                             >  2:131286/1‑145 (MQ=255)
                                                                                                 tttAAACGGACAGGTTTGCATAGGGTGTCCTTTAGTAAAACCACAGttgtaagtttatggggtacctgcggccttataatcacacccagacaacatcacagaaatgtacctggatcataatttaaacaaaaaggttaaaaagttt                                            <  1:342803‑M1/145‑100 (MQ=255)
                                                                                                 tttAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagttt                                            <  2:223890‑M1/145‑100 (MQ=255)
                                                                                                 tttAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagttt                                            >  2:150517‑M1/1‑46 (MQ=255)
                                                                                                              gTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttaagctgactcgca                               >  2:23259‑M1/1‑33 (MQ=255)
                                                                                                              gTTTTCATAGGGTGTCCTTTAGTAAAACCACAGttataaggttatggggtacctgcggccttaaaataacacccagacaacatcacagacatgtacctggatcataattgaaacaaaaaggttaaaaagatagaactggctcgca                               >  1:255446‑M1/1‑33 (MQ=255)
                                                                                                               ttttCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcac                              >  1:239737‑M1/1‑32 (MQ=255)
                                                                                                               ttttCATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagttagagctcgctcgcac                              >  2:25301‑M1/1‑32 (MQ=255)
                                                                                                                   catattgtgtcctttaATAAAACCAGAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaac                          <  2:151992‑M1/139‑118 (MQ=255)
                                                                                                                   cATAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaac                          >  1:107667‑M1/1‑28 (MQ=255)
                                                                                                                    aTAGGGTGTCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaacgtttgagctggctcgcacaaacc                         >  1:421230‑M1/1‑27 (MQ=255)
                                                                                                                            tCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcccaaaccggcacttt                 >  2:208945‑M1/1‑19 (MQ=255)
                                                                                                                            tCCTTTAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcacttt                 >  2:272172‑M1/1‑19 (MQ=255)
                                                                                                                               tttAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacagcatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcacttttta              >  1:53026‑M1/1‑16 (MQ=255)
                                                                                                                               tttAGTAAAACCACAGGTCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACttt              >  2:410082/1‑145 (MQ=255)
                                                                                                                                 tAGTAAAACCACAGttgtaaggttatggggtacctgcggccttaaaatttcaccttgacatcatcacagtaatgttcctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcactttttaaa            <  2:141372‑M1/145‑132 (MQ=255)
                                                                                                                                 tAGTAAAACCACAGgtggaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgcacctggatcctaattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcactttttaaa            <  1:102954‑M1/145‑132 (MQ=255)
                                                                                                                                    tAAAACCACAGtttgaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcactttttaaagtt         <  1:6609‑M1/145‑135 (MQ=255)
                                                                                                                                    tAAAACCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcactttttaaagtt         >  2:196964‑M1/1‑11 (MQ=255)
                                                                                                                                    tAAAACCACAGtggtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaaggtacctggatcataattgaaacaaaaagcttaaaacgtttgagctggctcgcgcaaacccgaactttttaaggtt         >  1:57688‑M1/1‑11 (MQ=255)
                                                                                                                                      aaaCCACAGttgtaaggttatggggtacctgcggtcttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcactttttaaagtttt       <  2:153030‑M1/145‑137 (MQ=255)
                                                                                                                                      aaaCCACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcactttttaaagtttt       <  1:346928‑M1/145‑137 (MQ=255)
                                                                                                                                      aaaCCACAGttgtaaggttatggggtacctgagggaagagattgacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcactttttaaagattt       >  2:312081‑M1/1‑9 (MQ=255)
                                                                                                                                      aaaCCACAGttgtaaggttatgggatacctgcggtcttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcactttttaaagtatt       >  2:214206‑M1/1‑9 (MQ=255)
                                                                                                                                      aaaCCACAGttgtaagggtagggggtacctgcggccttaaaataacacccagacaacataacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcactttttaaagtttt       <  2:85139‑M1/145‑137 (MQ=255)
                                                                                                                                       aaCCACAGGTCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACAGCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGtt      <  2:63308/145‑1 (MQ=255)
                                                                                                                                         ccACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcactttttaaagttttgta    >  1:399920‑M1/1‑6 (MQ=255)
                                                                                                                                         ccACAGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctcgcacaaaccagcactttttaaagttttgta    >  1:345992‑M1/1‑6 (MQ=255)
                                                                                                                                           acaGttgtaaggttatggggtacctgcggccttaaaataacacccagacaacatcacagaaatgtacctggatcataattgaaacaaaaaggttaaaaagtttgagctggctagcacaaaccagcactttttaaagttttgtact  >  2:219035‑M1/1‑4 (MQ=255)
                                                                                                                                           acaGtcgtaaggcaatggggtacctgcggccttaaaataacacccagacaacatcaaagaaatgtaccaggataataattgaaacaaaaagggtaaaaagtttgagctggctcgcacaaaccagcactttttaaagttttgtaat  >  1:111112‑M1/1‑4 (MQ=255)
                                                                                                                                              |                                                                                                                                             
CGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGGTCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGT  >  CP009273/3676690‑3676973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.