mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 982,560 | T→A | intergenic (‑122/+481) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 2,084,016 | Δ2 bp | coding (344‑345/900 nt) | hisG → | ATP phosphoribosyltransferase |
| JC JC | 2,400,257 | IS5 (+) +4 bp | intergenic (‑137/‑780) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| RA | 2,420,353 | A→G | intergenic (‑86/+135) | hisJ ← / ← argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| JC JC | 3,178,254 | IS5 (+) +4 bp | coding (56‑59/291 nt) | yqiC → | BMFP family putative fusogenic protein |
| RA | 3,371,135 | G→T | intergenic (‑356/+39) | sspA ← / ← rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2084533 | 2085919 | 1387 | 35 [34] | [34] 36 | [hisG]–[hisC] | [hisG], hisD, [hisC] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | NA (NA) | 133 (1.830) | 88/296 | 0.0 | NA | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 1203246 = | 10 (0.140) | 57 (0.880) | 49/264 | 0.3 | 84.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 12 (0.180) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 10 (0.140) | 59 (0.910) | 46/264 | 0.4 | 84.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 12 (0.180) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 2096424 | NA (NA) | 87 (1.190) | 67/296 | 0.1 | 59.2% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2427745 | 60 (0.820) | coding (476/660 nt) | dedA | DedA family inner membrane protein | |||||
| * | ? | CP009273 | 2420053 = | 155 (2.130) | 62 (0.850) | 51/296 | 0.5 | 29.4% | coding (215/783 nt) | hisJ | histidine/lysine/arginine/ornithine transporter subunit |
| ? | CP009273 | = 2420357 | 142 (1.950) | intergenic (‑90/+131) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit | |||||