mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,388,249 | 0 | T | C | 23.8% | 117.7 / 19.6 | 65 | T93A (ACT→GCT) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Marginal new junction evidence (lowest skew 10 of 81 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 932806 | 74 (1.020) | 5 (0.080) | 5/264 | 9.7 | 7.1% | intergenic (+137/‑22) | ftsK/lolA | DNA translocase at septal ring sorting daughter chromsomes/lipoprotein chaperone |
| ? | CP009273 | = 932790 | 65 (1.000) | intergenic (+121/‑38) | ftsK/lolA | DNA translocase at septal ring sorting daughter chromsomes/lipoprotein chaperone | |||||
| * | ? | CP009273 | = 311563 | NA (NA) | 11 (0.160) | 6/288 | 9.8 | NA | coding (266/867 nt) | insF1 | IS3 transposase B |
| ? | CP009273 | = 311586 | NA (NA) | coding (289/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | = 3888593 | 85 (1.170) | 5 (0.070) | 5/272 | 9.9 | 5.9% | intergenic (+15/+39) | chrR/purP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter |
| ? | CP009273 | = 3888604 | 82 (1.230) | intergenic (+26/+28) | chrR/purP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter | |||||
| * | ? | CP009273 | 270331 = | NA (NA) | 7 (0.100) | 5/278 | 10.1 | NA | noncoding (126/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270374 = | NA (NA) | noncoding (169/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | 2404880 = | 180 (2.470) | 5 (0.070) | 5/282 | 10.2 | 2.9% | intergenic (‑49/+38) | yfbS/yfbT | putative transporter/sugar phosphatas |
| ? | CP009273 | 2404900 = | 168 (2.420) | intergenic (‑69/+18) | yfbS/yfbT | putative transporter/sugar phosphatas | |||||
| * | ? | CP009273 | 1327931 = | 83 (1.140) | 6 (0.090) | 5/284 | 10.3 | 7.1% | intergenic (+29/‑181) | topA/cysB | DNA topoisomerase I, omega subunit/N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor |
| ? | CP009273 | 1327955 = | 78 (1.120) | intergenic (+53/‑157) | topA/cysB | DNA topoisomerase I, omega subunit/N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor | |||||
| * | ? | CP009273 | = 78327 | 66 (0.910) | 6 (0.090) | 5/286 | 10.3 | 8.3% | coding (119/1092 nt) | leuB | 3‑isopropylmalate dehydrogenase, NAD(+)‑dependent |
| ? | CP009273 | = 78363 | 69 (0.980) | coding (83/1092 nt) | leuB | 3‑isopropylmalate dehydrogenase, NAD(+)‑dependent | |||||
| * | ? | CP009273 | 1360678 = | 83 (1.140) | 7 (0.100) | 5/290 | 10.5 | 8.1% | coding (872/1266 nt) | puuE | 4‑aminobutyrate aminotransferase, PLP‑dependent |
| ? | CP009273 | 1360733 = | 78 (1.090) | coding (927/1266 nt) | puuE | 4‑aminobutyrate aminotransferase, PLP‑dependent | |||||
| * | ? | CP009273 | 4285770 = | NA (NA) | 8 (0.120) | 4/282 | 10.9 | 9.2% | noncoding (48/530 nt) | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | 4285789 = | 83 (1.140) | noncoding (67/530 nt) | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | CP009273 | 3943804 = | 61 (0.840) | 4 (0.060) | 4/282 | 10.9 | 6.4% | intergenic (+24/‑63) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein |
| ? | CP009273 | 3943830 = | 58 (0.840) | intergenic (+50/‑37) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein | |||||