mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 26 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4161535 | 28 (0.510) | 12 (0.230) | 6/280 | 5.9 | 30.9% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | CP009273 | = 4202950 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | = 3214250 | NA (NA) | 6 (0.120) | 5/268 | 6.1 | NA | noncoding (12/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3214257 | NA (NA) | noncoding (19/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2897623 = | 93 (1.700) | 5 (0.100) | 5/278 | 6.3 | 5.3% | intergenic (+890/+483) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | CP009273 | 2897641 = | 90 (1.730) | intergenic (+908/+465) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | CP009273 | = 3940048 | 72 (1.310) | 12 (0.230) | 5/280 | 6.4 | 14.8% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4161529 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | CP009273 | 3312298 = | 61 (1.110) | 5 (0.090) | 5/284 | 6.4 | 8.0% | coding (303/1344 nt) | argG | argininosuccinate synthetase |
| ? | CP009273 | 3312323 = | 56 (1.050) | coding (328/1344 nt) | argG | argininosuccinate synthetase | |||||
| * | ? | CP009273 | 2719559 = | NA (NA) | 12 (0.230) | 5/280 | 6.4 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2719583 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 225231 | 38 (0.690) | 12 (0.230) | 5/280 | 6.4 | 24.8% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2719583 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 270331 = | NA (NA) | 6 (0.120) | 4/274 | 6.8 | NA | noncoding (126/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270374 = | NA (NA) | noncoding (169/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | = 225213 | 36 (0.660) | 11 (0.210) | 4/280 | 6.9 | 24.2% | intergenic (+64/‑30) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 4033859 | NA (NA) | intergenic (+76/‑18) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 299328 = | 56 (1.020) | 3 (0.060) | 3/266 | 7.2 | 5.6% | intergenic (+12/+236) | yagU/ykgJ | DUF1440 family inner membrane protein/UPF0153 cysteine cluster protein |
| ? | CP009273 | 299361 = | 51 (1.020) | intergenic (+45/+203) | yagU/ykgJ | DUF1440 family inner membrane protein/UPF0153 cysteine cluster protein | |||||