mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 45 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 48 (0.370) | 8 (0.060) | 8/488 | 9.6 | 10.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 85 (0.690) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 2756112 | 114 (0.890) | 5 (0.040) | 5/484 | 11.1 | 4.6% | intergenic (+734/‑47) | smpB/intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase |
| ? | NC_000913 | = 2756129 | 100 (0.810) | intergenic (+751/‑30) | smpB/intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase | |||||
| * | ? | NC_000913 | = 3493765 | NA (NA) | 5 (0.040) | 5/490 | 11.2 | NA | noncoding (8/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3493775 | NA (NA) | noncoding (18/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 54955 | 162 (1.260) | 5 (0.040) | 5/504 | 11.4 | 3.0% | coding (2155/2355 nt) | lptD | LPS assembly OM complex LptDE, beta‑barrel component |
| ? | NC_000913 | 54959 = | 158 (1.230) | coding (2151/2355 nt) | lptD | LPS assembly OM complex LptDE, beta‑barrel component | |||||
| * | ? | NC_000913 | = 468264 | 99 (0.770) | 4 (0.030) | 4/470 | 11.5 | 4.2% | intergenic (+34/‑119) | cof/ybaO | thiamine pyrimidine pyrophosphate hydrolase; HMP‑PP phosphatase/putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 468246 | 89 (0.740) | intergenic (+16/‑137) | cof/ybaO | thiamine pyrimidine pyrophosphate hydrolase; HMP‑PP phosphatase/putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 315401 = | NA (NA) | 4 (0.030) | 4/480 | 11.6 | NA | noncoding (173/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315627 = | NA (NA) | noncoding (399/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 4335416 | 120 (0.930) | 4 (0.030) | 4/492 | 11.8 | 3.1% | coding (175/1644 nt) | eptA | lipid A phosphoethanolamine transferase |
| ? | NC_000913 | = 4335751 | 136 (1.090) | coding (1281/1338 nt) | adiC | arginine:agmatine antiporter | |||||
| * | ? | NC_000913 | 4317661 = | 97 (0.750) | 4 (0.030) | 4/492 | 11.8 | 4.0% | coding (235/681 nt) | phnL | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase |
| ? | NC_000913 | 4317690 = | 100 (0.800) | coding (206/681 nt) | phnL | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase | |||||
| * | ? | NC_000913 | 2566515 = | 112 (0.870) | 4 (0.030) | 4/490 | 11.8 | 3.7% | coding (370/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase |
| ? | NC_000913 | 2566575 = | 102 (0.820) | coding (310/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 4 (0.030) | 4/488 | 11.8 | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||