breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (lowest skew 10 of 45 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4542682 =48 (0.370)8 (0.060) 8/488 9.6 10.9% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 85 (0.690)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 2756112114 (0.890)5 (0.040) 5/484 11.1 4.6% intergenic (+734/‑47) smpB/intA tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase
?NC_000913 = 2756129 100 (0.810)intergenic (+751/‑30) smpB/intA tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase
* ? NC_000913 = 3493765NA (NA)5 (0.040) 5/490 11.2 NA noncoding (8/26 nt) REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3493775 NA (NA)noncoding (18/26 nt) REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 54955162 (1.260)5 (0.040) 5/504 11.4 3.0% coding (2155/2355 nt) lptD LPS assembly OM complex LptDE, beta‑barrel component
?NC_000913 54959 = 158 (1.230)coding (2151/2355 nt) lptD LPS assembly OM complex LptDE, beta‑barrel component
* ? NC_000913 = 46826499 (0.770)4 (0.030) 4/470 11.5 4.2% intergenic (+34/‑119) cof/ybaO thiamine pyrimidine pyrophosphate hydrolase; HMP‑PP phosphatase/putative DNA‑binding transcriptional regulator
?NC_000913 = 468246 89 (0.740)intergenic (+16/‑137) cof/ybaO thiamine pyrimidine pyrophosphate hydrolase; HMP‑PP phosphatase/putative DNA‑binding transcriptional regulator
* ? NC_000913 315401 =NA (NA)4 (0.030) 4/480 11.6 NA noncoding (173/1255 nt) IS3 repeat region
?NC_000913 315627 = NA (NA)noncoding (399/1255 nt) IS3 repeat region
* ? NC_000913 = 4335416120 (0.930)4 (0.030) 4/492 11.8 3.1% coding (175/1644 nt) eptA lipid A phosphoethanolamine transferase
?NC_000913 = 4335751 136 (1.090)coding (1281/1338 nt) adiC arginine:agmatine antiporter
* ? NC_000913 4317661 =97 (0.750)4 (0.030) 4/492 11.8 4.0% coding (235/681 nt) phnL ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase
?NC_000913 4317690 = 100 (0.800)coding (206/681 nt) phnL ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase
* ? NC_000913 2566515 =112 (0.870)4 (0.030) 4/490 11.8 3.7% coding (370/1404 nt) eutA reactivating factor for ethanolamine ammonia lyase
?NC_000913 2566575 = 102 (0.820)coding (310/1404 nt) eutA reactivating factor for ethanolamine ammonia lyase
* ? NC_000913 381681 =NA (NA)4 (0.030) 4/488 11.8 NA noncoding (422/1331 nt) IS2 repeat region
?NC_000913 381753 = NA (NA)noncoding (494/1331 nt) IS2 repeat region