mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 28.2% | 46.9 / 16.3 | 39 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 762116 = | 72 (0.770) | 6 (0.070) | 4/474 | 8.5 | 6.6% | coding (595/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913 | 762340 = | 101 (1.150) | coding (819/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913 | 4542682 = | 22 (0.240) | 4 (0.040) | 4/484 | 8.6 | 10.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 47 (0.520) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 3505613 | 61 (0.650) | 3 (0.030) | 3/470 | 9.1 | 5.0% | coding (408/1086 nt) | yhfS | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| ? | NC_000913 | 3505821 = | 56 (0.640) | coding (200/1086 nt) | yhfS | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
| * | ? | NC_000913 | = 4532138 | 142 (1.520) | 3 (0.030) | 3/488 | 9.3 | 2.5% | pseudogene (173/261 nt) | yjhY | pseudogene, zinc finger protein family |
| ? | NC_000913 | = 4532518 | 98 (1.080) | coding (666/747 nt) | yjhP | putative methyltransferase | |||||
| * | ? | NC_000913 | = 3352920 | 97 (1.040) | 3 (0.030) | 3/490 | 9.3 | 2.9% | coding (106/2337 nt) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| ? | NC_000913 | = 3353086 | 109 (1.200) | intergenic (‑61/+35) | arcB/yhcC | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB/putative Fe‑S oxidoreductase, Radical SAM superfamily protein | |||||
| * | ? | NC_000913 | 1750551 = | 113 (1.210) | 3 (0.030) | 3/492 | 9.4 | 2.4% | coding (463/669 nt) | ydhX | putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| ? | NC_000913 | 1750767 = | 135 (1.480) | coding (247/669 nt) | ydhX | putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex | |||||
| * | ? | NC_000913 | = 934161 | 73 (0.780) | 3 (0.030) | 3/496 | 9.4 | 3.4% | coding (938/3990 nt) | ftsK | DNA translocase at septal ring sorting daughter chromsomes |
| ? | NC_000913 | = 934228 | 97 (1.050) | coding (1005/3990 nt) | ftsK | DNA translocase at septal ring sorting daughter chromsomes | |||||
| * | ? | NC_000913 | = 780440 | 113 (1.210) | 3 (0.030) | 3/498 | 9.4 | 2.6% | intergenic (+51/‑114) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys |
| ? | NC_000913 | 780444 = | 110 (1.190) | intergenic (+55/‑110) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys | |||||
| * | ? | NC_000913 | = 382195 | NA (NA) | 3 (0.030) | 3/500 | 9.4 | NA | noncoding (936/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382311 | NA (NA) | noncoding (1052/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2134912 = | 88 (0.940) | 3 (0.030) | 3/502 | 9.5 | 3.3% | coding (741/2163 nt) | wzc | colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| ? | NC_000913 | 2134921 = | 90 (0.960) | coding (732/2163 nt) | wzc | colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase | |||||