mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 27 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,493,045 | 0 | A | G | 27.3% | 28.2 / 11.5 | 22 | I70I (ATT→ATC) | frc | formyl‑CoA transferase, NAD(P)‑binding |
| * | NC_000913 | 1,707,028 | 0 | T | G | 26.1% | 30.9 / 14.0 | 23 | V37G (GTA→GGA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 1,707,029 | 0 | A | G | 26.1% | 29.5 / 11.0 | 23 | V37V (GTA→GTG) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 1,707,031 | 0 | C | A | 26.1% | 38.4 / 11.1 | 23 | P38H (CCC→CAC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 4,479,020 | 0 | A | T | 23.7% | 68.7 / 20.9 | 38 | intergenic (+131/+14) | rraB/yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| * | NC_000913 | 3,927,123 | 0 | A | T | 22.2% | 48.1 / 11.9 | 27 | intergenic (‑120/‑32) | asnC/asnA | transcriptional activator of asnA; autorepressor/asparagine synthetase A |
| * | NC_000913 | 4,082,696 | 0 | G | C | 21.6% | 114.8 / 29.4 | 52 | Q22E (CAG→GAG) | fdoH | formate dehydrogenase‑O, Fe‑S subunit |
| * | NC_000913 | 3,927,124 | 0 | T | G | 21.4% | 52.3 / 14.0 | 28 | intergenic (‑121/‑31) | asnC/asnA | transcriptional activator of asnA; autorepressor/asparagine synthetase A |
| * | NC_000913 | 3,927,125 | 0 | C | A | 21.4% | 62.8 / 12.8 | 28 | intergenic (‑122/‑30) | asnC/asnA | transcriptional activator of asnA; autorepressor/asparagine synthetase A |
| * | NC_000913 | 3,927,126 | 0 | A | T | 21.4% | 54.8 / 11.8 | 28 | intergenic (‑123/‑29) | asnC/asnA | transcriptional activator of asnA; autorepressor/asparagine synthetase A |
| * | NC_000913 | 4,296,060 | 0 | C | T | 21.4% | 52.5 / 10.2 | 28 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 632,140 | 0 | G | T | 21.2% | 69.8 / 13.9 | 33 | intergenic (+141/‑42) | cstA/ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| * | NC_000913 | 632,141 | 0 | C | T | 21.2% | 63.3 / 13.1 | 33 | intergenic (+142/‑41) | cstA/ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| * | NC_000913 | 2,477,016 | 0 | T | A | 21.1% | 74.6 / 12.7 | 39 | Q205L (CAG→CTG) | dsdC | dsd operon activator; autorepressor |
| * | NC_000913 | 3,448,275 | 0 | T | G | 20.7% | 52.9 / 13.9 | 29 | intergenic (‑126/+39) | rplN/rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| * | NC_000913 | 3,448,277 | 0 | T | A | 20.7% | 57.6 / 11.5 | 29 | intergenic (‑128/+37) | rplN/rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| * | NC_000913 | 3,448,278 | 0 | C | A | 20.7% | 68.8 / 10.4 | 29 | intergenic (‑129/+36) | rplN/rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| * | NC_000913 | 632,133 | 0 | T | G | 20.6% | 66.6 / 15.0 | 34 | intergenic (+134/‑49) | cstA/ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| * | NC_000913 | 632,134 | 0 | C | A | 20.6% | 78.0 / 11.7 | 34 | intergenic (+135/‑48) | cstA/ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| * | NC_000913 | 632,126 | 0 | A | G | 20.5% | 77.3 / 15.4 | 39 | intergenic (+127/‑56) | cstA/ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| Marginal new junction evidence (lowest skew 10 of 64 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3927413 | 47 (1.360) | 8 (0.240) | 7/236 | 3.0 | 13.8% | coding (259/993 nt) | asnA | asparagine synthetase A |
| ? | NC_000913 | = 3927459 | 55 (1.660) | coding (305/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | NC_000913 | 2729237 = | 59 (1.710) | 8 (0.250) | 6/232 | 3.3 | 12.6% | intergenic (‑53/+132) | rrlG/gltW | 23S ribosomal RNA of rrnG operon/tRNA‑Glu |
| ? | NC_000913 | = 3943624 | NA (NA) | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 225697 | 33 (0.960) | 8 (0.250) | 6/232 | 3.3 | 20.4% | intergenic (+122/‑62) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 3943624 | NA (NA) | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 4168491 | 41 (1.190) | 6 (0.190) | 5/224 | 3.5 | 13.9% | intergenic (+44/‑150) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4209911 | NA (NA) | intergenic (+62/‑132) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 4168491 | 41 (1.190) | 6 (0.190) | 5/224 | 3.5 | 12.7% | intergenic (+44/‑150) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4168509 | 45 (1.430) | intergenic (+62/‑132) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | = 1840564 | 36 (1.040) | 5 (0.150) | 5/232 | 3.6 | 14.1% | coding (1098/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase |
| ? | NC_000913 | = 1840585 | 27 (0.830) | coding (1119/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase | |||||
| * | ? | NC_000913 | 1672598 = | 34 (0.980) | 6 (0.180) | 5/232 | 3.6 | 16.4% | coding (639/822 nt) | ydgD | putative peptidase |
| ? | NC_000913 | 1672645 = | 29 (0.890) | coding (686/822 nt) | ydgD | putative peptidase | |||||
| * | ? | NC_000913 | = 4168341 | 10 (0.290) | 4 (0.130) | 4/226 | 3.9 | 34.5% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 6 (0.190) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 3555446 | 20 (0.580) | 4 (0.130) | 4/226 | 3.9 | 15.6% | coding (2362/2706 nt) | malT | mal regulon transcriptional activator |
| ? | NC_000913 | = 3555468 | 25 (0.790) | coding (2384/2706 nt) | malT | mal regulon transcriptional activator | |||||
| * | ? | NC_000913 | 2729443 = | 19 (0.550) | 4 (0.130) | 4/226 | 3.9 | 23.2% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 4168331 | 9 (0.280) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||