New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1967784	45 (1.300)	4 (0.120)	4/234	3.8	8.3%	coding (718/1050 nt)	cheB	fused chemotaxis regulator: protein‑glutamate methylesterase in two‑component regulatory system with CheA
	?	NC_000913	= 1967815	46 (1.410)					coding (687/1050 nt)	cheB	fused chemotaxis regulator: protein‑glutamate methylesterase in two‑component regulatory system with CheA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGTTGCCCATACCGGTCAGGATCACCCCAACCGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGT  >  NC_000913/1967645‑1967916                                                                                                                                            |                                                                                                                                     tcgtTGCCCATACCGGTCAGGATCACCCCAACCGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGa                                                                                                                             <  2:76012/149‑1 (MQ=255)        ccATACCGGTCAGGATCACCCCAACCGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACATCACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTc                                                                                                                       >  6:159240/1‑148 (MQ=255)         cATACCGGTCAGGATCACCCCAACCGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCa                                                                                                                     <  8:62934/149‑1 (MQ=255)           tACCGGTCAGGATCACCCCAACCGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCata                                                                                                                   >  6:64272/1‑149 (MQ=255)           tACCGGTCAGGATCACCCCAACCGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCata                                                                                                                   <  5:64272/149‑1 (MQ=255)            aCCGGTCAGGATCACCCCAACCGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCGGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCatat                                                                                                                  >  4:135834/1‑149 (MQ=255)                     gATCACCCCAACCGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGc                                                                                                         >  5:113914/1‑149 (MQ=255)                                 cGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAata                                                                                              >  6:117345/1‑148 (MQ=255)                                  gCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAAtata                                                                                            <  3:135834/149‑1 (MQ=255)                                           cccGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCata                                                                                                                   >  3:129074/1‑117 (MQ=255)                                           cccGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCata                                                                                                                   <  4:129074/117‑1 (MQ=255)                                           cccGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGccc                                                                                   >  1:151859/1‑149 (MQ=255)                                                         gACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGtt                                                                     >  3:109864/1‑149 (MQ=255)                                                                   aacaacACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTc                                                           <  6:113914/149‑1 (MQ=255)                                                                   aacaacACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTc                                                           >  4:108591/1‑149 (MQ=255)                                                                      aacaCATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGc                                                        <  3:108591/149‑1 (MQ=255)                                                                        cacaTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGctt                                                      >  6:84790/1‑149 (MQ=255)                                                                           aTCTACCGAAGGCCGATGACGGTTAACTGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGacac                                                                        >  2:102355/1‑128 (MQ=255)                                                                           aTCTACCGAAGGCCGATGACGGTTAACTGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGacac                                                                        <  1:102355/128‑1 (MQ=255)                                                                           aTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGcc                                                                                                               <  2:1057/89‑1 (MQ=255)                                                                           aTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGcc                                                                                                               >  1:1057/1‑89 (MQ=255)                                                                           aTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAatat                                                                                             >  7:32713/1‑107 (MQ=255)                                                                           aTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAatat                                                                                             <  8:32713/107‑1 (MQ=255)                                                                           aTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCg                                                                >  4:12127/1‑136 (MQ=255)                                                                           aTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCg                                                                <  3:12127/136‑1 (MQ=255)                                                                           aTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGcttctt                                                   >  4:127410/1‑149 (MQ=255)                                                                               aCCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTc                                                           <  1:2504/137‑1 (MQ=255)                                                                               aCCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTc                                                           >  2:2504/1‑137 (MQ=255)                                                                                        cGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCAt                                                                                       <  5:42174/100‑1 (MQ=255)                                                                                        cGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCAt                                                                                       >  6:42174/1‑100 (MQ=255)                                                                                        cGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTg                                      <  5:117345/149‑1 (MQ=255)                                                                                                   aaCCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCtta                            <  5:159240/148‑1 (MQ=255)                                                                                                    aCCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCttatt                          <  3:127410/149‑1 (MQ=255)                                                                                                      cgccgGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCttatt                          >  6:28779/1‑147 (MQ=255)                                                                                                      cgccgGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTaa                        <  5:84790/149‑1 (MQ=255)                                                                                                             ccATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTc                 <  2:151859/149‑1 (MQ=255)                                                                                                                     aaTTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGcttctt                                                   <  7:150491/107‑1 (MQ=255)                                                                                                                     aaTTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGcttctt                                                   >  8:150491/1‑107 (MQ=255)                                                                                                                        tttGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCttat                           >  7:18307/1‑128 (MQ=255)                                                                                                                        tttGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCttat                           <  8:18307/128‑1 (MQ=255)                                                                                                                           gATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCgg    <  4:109864/148‑1 (MQ=255)                                                                                                                                ggTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGt  >  1:1892/1‑145 (MQ=255)                                                                                                                                ggTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGt  <  2:1892/145‑1 (MQ=255)                                                                                                                                 gTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTc                                                           <  7:141908/87‑1 (MQ=255)                                                                                                                                 gTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTc                                                           >  8:141908/1‑87 (MQ=255)                                                                                                                                            |                                                                                                                                     TCGTTGCCCATACCGGTCAGGATCACCCCAACCGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGT  >  NC_000913/1967645‑1967916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.