New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1967784	45 (1.300)	4 (0.120)	4/234	3.8	8.3%	coding (718/1050 nt)	cheB	fused chemotaxis regulator: protein‑glutamate methylesterase in two‑component regulatory system with CheA
	?	NC_000913	= 1967815	46 (1.410)					coding (687/1050 nt)	cheB	fused chemotaxis regulator: protein‑glutamate methylesterase in two‑component regulatory system with CheA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGTGAAACCGGGCGGCATATGCTGGGTAATTAACAG  >  NC_000913/1967677‑1967949                                                                                                                                           |                                                                                                                                       cGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAata                                                                                                                               >  6:117345/1‑148 (MQ=255)  gCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAAtata                                                                                                                             <  3:135834/149‑1 (MQ=255)           cccGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGccc                                                                                                                    >  1:151859/1‑149 (MQ=255)                         gACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGtt                                                                                                      >  3:109864/1‑149 (MQ=255)                                   aacaacACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTc                                                                                            >  4:108591/1‑149 (MQ=255)                                   aacaacACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTc                                                                                            <  6:113914/149‑1 (MQ=255)                                      aacaCATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGc                                                                                         <  3:108591/149‑1 (MQ=255)                                        cacaTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGctt                                                                                       >  6:84790/1‑149 (MQ=255)                                           aTCTACCGAAGGCCGATGACGGTTAACTGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGacac                                                                                                         <  1:102355/128‑1 (MQ=255)                                           aTCTACCGAAGGCCGATGACGGTTAACTGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGacac                                                                                                         >  2:102355/1‑128 (MQ=255)                                           aTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAatat                                                                                                                              <  8:32713/107‑1 (MQ=255)                                           aTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAatat                                                                                                                              >  7:32713/1‑107 (MQ=255)                                           aTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCg                                                                                                 <  3:12127/136‑1 (MQ=255)                                           aTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCg                                                                                                 >  4:12127/1‑136 (MQ=255)                                           aTCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGcttctt                                                                                    >  4:127410/1‑149 (MQ=255)                                               aCCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTc                                                                                            >  2:2504/1‑137 (MQ=255)                                               aCCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTc                                                                                            <  1:2504/137‑1 (MQ=255)                                                        cGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCAt                                                                                                                        >  6:42174/1‑100 (MQ=255)                                                        cGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCAt                                                                                                                        <  5:42174/100‑1 (MQ=255)                                                        cGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTg                                                                       <  5:117345/149‑1 (MQ=255)                                                                   aaCCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCtta                                                             <  5:159240/148‑1 (MQ=255)                                                                    aCCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCttatt                                                           <  3:127410/149‑1 (MQ=255)                                                                      cgccgGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCttatt                                                           >  6:28779/1‑147 (MQ=255)                                                                      cgccgGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTaa                                                         <  5:84790/149‑1 (MQ=255)                                                                             ccATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTc                                                  <  2:151859/149‑1 (MQ=255)                                                                                     aaTTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGcttctt                                                                                    >  8:150491/1‑107 (MQ=255)                                                                                     aaTTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGcttctt                                                                                    <  7:150491/107‑1 (MQ=255)                                                                                        tttGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCttat                                                            <  8:18307/128‑1 (MQ=255)                                                                                        tttGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCttat                                                            >  7:18307/1‑128 (MQ=255)                                                                                           gATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCgg                                     <  4:109864/148‑1 (MQ=255)                                                                                                ggTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGt                                   <  2:1892/145‑1 (MQ=255)                                                                                                ggTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGt                                   >  1:1892/1‑145 (MQ=255)                                                                                                 gTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTc                                                                                            <  7:141908/87‑1 (MQ=255)                                                                                                 gTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTc                                                                                            >  8:141908/1‑87 (MQ=255)                                                                                                               tACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGcttctt                                                                                    >  3:58673/1‑81 (MQ=255)                                                                                                               tACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGcttctt                                                                                    <  4:58673/81‑1 (MQ=255)                                                                                                               tACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGTGAAACCGGGCGGCATATGc                >  3:65749/1‑149 (MQ=255)                                                                                                                    gACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCaaaa                                           <  8:125380/117‑1 (MQ=255)                                                                                                                            cATATGCCGATCGCCCGGCGCAATGTAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTC‑TTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGTGAAACCGGGCGGCATATGCTGGGTAATTAACAg  >  5:21023/1‑149 (MQ=255)                                                                                                                            cATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGTGAAACCGGGCGGCATATGCTGGGTAATTAAc    <  5:28779/148‑1 (MQ=255)                                                                                                                             atatGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGCGCGGGTGAAACCGggc                         >  8:110473/1‑126 (MQ=255)                                                                                                                             atatGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGTGAAACCGggc                         <  7:110473/126‑1 (MQ=255)                                                                                                                                    gATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGCGCGGGTGAAACCGGGCGGCATATGCTGGGTAATTaa     >  7:82523/1‑139 (MQ=255)                                                                                                                                    gATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGTGAAACCGGGCGGCATATGCTGGGTAATTaa     <  8:82523/139‑1 (MQ=255)                                                                                                                                    gATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGTGAAACCGGGCGGCATATGCTGGGTAATTaa     <  2:14890/139‑1 (MQ=255)                                                                                                                                    gATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGTGAAACCGGGCGGCATATGCTGGGTAATTaa     >  1:14890/1‑139 (MQ=255)                                                                                                                                           |                                                                                                                                       CGCATTACGCCCCGCCTGTTTGGCGACAGAATGGAACAACACATCTACCGAAGGCCGATGACGGTTAACCGCCGGGCCATCGTGAATTTTGATTTGGTAATTTGCGCCACTACGCGACAGCTCCATATGCCGATCGCCCGGCGCAATATAGGCATGCCCCGGCAAGACACGTTCTCCGTCTTCGGCTTCTTTAACCCCGATCTGGCAAAGCTTATTAAGTCTGTCGGCAAAAGAGCGGGTGAAACCGGGCGGCATATGCTGGGTAATTAACAG  >  NC_000913/1967677‑1967949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.