mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 57 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4636330 | 104 (1.030) | 4 (0.040) | 4/244 | NT | 3.6% | coding (324/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | = 4636367 | 113 (1.190) | coding (361/690 nt) | creB | response regulator in two‑component regulatory system with CreC | |||||
| * | ? | NC_000913 | 4497494 = | 252 (2.500) | 3 (0.030) | 3/246 | NT | 1.3% | pseudogene (820/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| ? | NC_000913 | 4497532 = | 227 (2.360) | pseudogene (858/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase | |||||
| * | ? | NC_000913 | = 4488423 | 203 (2.020) | 6 (0.070) | 10/234 | NT | 3.0% | intergenic (+23/+138) | lptG/yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| ? | NC_000913 | = 4488427 | 198 (2.170) | intergenic (+27/+134) | lptG/yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold | |||||
| * | ? | NC_000913 | 4463460 = | 206 (2.050) | 3 (0.030) | 3/240 | NT | 1.6% | coding (1250/1656 nt) | treC | trehalose‑6‑P hydrolase |
| ? | NC_000913 | 4463530 = | 173 (1.850) | coding (1180/1656 nt) | treC | trehalose‑6‑P hydrolase | |||||
| * | ? | NC_000913 | = 4443942 | 138 (1.370) | 3 (0.030) | 3/250 | NT | 2.2% | coding (1561/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit |
| ? | NC_000913 | = 4443976 | 130 (1.330) | coding (1595/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit | |||||
| * | ? | NC_000913 | = 4426591 | 241 (2.390) | 5 (0.060) | 6/232 | NT | 2.2% | intergenic (+34/+37) | rplI/yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
| ? | NC_000913 | = 4426592 | 232 (2.560) | intergenic (+35/+36) | rplI/yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein | |||||
| * | ? | NC_000913 | 4417551 = | 184 (1.830) | 5 (0.050) | 4/246 | NT | 2.8% | coding (600/750 nt) | yjfP | acyl CoA esterase |
| ? | NC_000913 | 4417584 = | 166 (1.730) | coding (633/750 nt) | yjfP | acyl CoA esterase | |||||
| * | ? | NC_000913 | = 4412115 | 201 (2.000) | 7 (0.070) | 6/246 | NT | 3.4% | coding (137/399 nt) | yjfL | UPF0719 family inner membrane protein |
| ? | NC_000913 | = 4412132 | 205 (2.140) | coding (154/399 nt) | yjfL | UPF0719 family inner membrane protein | |||||
| * | ? | NC_000913 | 4339180 = | 166 (1.650) | 3 (0.030) | 3/248 | NT | 1.9% | coding (1342/2268 nt) | adiA | arginine decarboxylase |
| ? | NC_000913 | 4339220 = | 154 (1.590) | coding (1302/2268 nt) | adiA | arginine decarboxylase | |||||
| * | ? | NC_000913 | 4335640 = | 216 (2.150) | 6 (0.070) | 8/230 | NT | 3.2% | intergenic (‑50/+54) | eptA/adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| ? | NC_000913 | 4335670 = | 170 (1.890) | intergenic (‑80/+24) | eptA/adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter | |||||