mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4460556 | 85 (0.970) | 3 (0.040) | 3/240 | NT | 3.4% | coding (2105/2139 nt) | nrdD | anaerobic ribonucleoside‑triphosphate reductase |
| ? | NC_000913 | = 4460582 | 91 (1.120) | coding (2079/2139 nt) | nrdD | anaerobic ribonucleoside‑triphosphate reductase | |||||
| * | ? | NC_000913 | 4193534 = | 93 (1.060) | 3 (0.040) | 3/246 | NT | 3.2% | coding (43/756 nt) | thiF | adenylyltransferase, modifies ThiS C‑terminus |
| ? | NC_000913 | 4193590 = | 91 (1.090) | coding (615/636 nt) | thiE | thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) | |||||
| * | ? | NC_000913 | 3873646 = | 101 (1.150) | 4 (0.050) | 3/244 | NT | 4.2% | coding (829/879 nt) | dgoK | 2‑oxo‑3‑deoxygalactonate kinase |
| ? | NC_000913 | 3873729 = | 88 (1.060) | coding (746/879 nt) | dgoK | 2‑oxo‑3‑deoxygalactonate kinase | |||||
| * | ? | NC_000913 | 3855060 = | 92 (1.050) | 3 (0.040) | 3/244 | NT | 3.7% | coding (1139/1185 nt) | emrD | multidrug efflux system protein |
| ? | NC_000913 | 3855100 = | 70 (0.840) | coding (1179/1185 nt) | emrD | multidrug efflux system protein | |||||
| * | ? | NC_000913 | 3852834 = | 114 (1.300) | 3 (0.040) | 3/236 | NT | 2.8% | intergenic (‑50/+56) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913 | 3852867 = | 103 (1.280) | intergenic (‑83/+23) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||
| * | ? | NC_000913 | = 3752916 | 110 (1.250) | 4 (0.050) | 4/248 | NT | 3.8% | coding (925/975 nt) | yiaU | putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 3752942 | 98 (1.160) | coding (951/975 nt) | yiaU | putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | = 3226187 | 104 (1.190) | 3 (0.040) | 3/240 | NT | 3.0% | intergenic (+16/‑47) | ebgC/ygjI | evolved beta‑D‑galactosidase, beta subunit; cupin superfamily/putative transporter |
| ? | NC_000913 | = 3226192 | 99 (1.210) | intergenic (+21/‑42) | ebgC/ygjI | evolved beta‑D‑galactosidase, beta subunit; cupin superfamily/putative transporter | |||||
| * | ? | NC_000913 | 2848864 = | 92 (1.050) | 4 (0.050) | 4/250 | NT | 4.5% | coding (378/1827 nt) | hycC | hydrogenase 3, membrane subunit |
| ? | NC_000913 | 2848904 = | 80 (0.940) | coding (338/1827 nt) | hycC | hydrogenase 3, membrane subunit | |||||
| * | ? | NC_000913 | = 2822051 | 93 (1.060) | 4 (0.050) | 4/246 | NT | 4.2% | intergenic (‑40/+88) | alaS/recX | alanyl‑tRNA synthetase/regulatory protein for RecA |
| ? | NC_000913 | = 2822073 | 93 (1.110) | intergenic (‑62/+66) | alaS/recX | alanyl‑tRNA synthetase/regulatory protein for RecA | |||||
| * | ? | NC_000913 | 2587201 = | 86 (0.980) | 3 (0.040) | 3/246 | NT | 3.9% | coding (1471/1701 nt) | narQ | sensory histidine kinase in two‑component regulatory system with NarP |
| ? | NC_000913 | 2587231 = | 66 (0.790) | coding (1501/1701 nt) | narQ | sensory histidine kinase in two‑component regulatory system with NarP | |||||