mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4349081 = | 81 (1.500) | 3 (0.060) | 3/250 | NT | 3.7% | intergenic (‑337/+234) | dcuB/dcuR | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS |
| ? | NC_000913 | 4349097 = | 77 (1.490) | intergenic (‑353/+218) | dcuB/dcuR | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS | |||||
| * | ? | NC_000913 | 4235746 = | 81 (1.500) | 3 (0.060) | 3/240 | NT | 4.3% | intergenic (+339/‑160) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913 | 4235770 = | 61 (1.230) | intergenic (+363/‑136) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913 | = 3798233 | 81 (1.500) | 2 (0.040) | 5/236 | NT | 2.6% | intergenic (+26/+6) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| ? | NC_000913 | = 3798235 | 75 (1.540) | intergenic (+28/+4) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis | |||||
| * | ? | NC_000913 | = 3760171 | 59 (1.090) | 3 (0.060) | 3/250 | NT | 5.0% | coding (1079/1392 nt) | selA | selenocysteine synthase |
| ? | NC_000913 | = 3760184 | 58 (1.120) | coding (1066/1392 nt) | selA | selenocysteine synthase | |||||
| * | ? | NC_000913 | = 3596549 | 62 (1.150) | 3 (0.060) | 3/260 | NT | 4.7% | coding (1012/1110 nt) | livK | leucine transporter subunit |
| ? | NC_000913 | = 3596567 | 59 (1.100) | coding (994/1110 nt) | livK | leucine transporter subunit | |||||
| * | ? | NC_000913 | = 3537321 | 50 (0.920) | 2 (0.040) | 3/244 | NT | 3.9% | intergenic (+33/‑64) | greB/yhgF | transcript cleavage factor/putative transcriptional accessory protein |
| ? | NC_000913 | = 3537325 | 51 (1.010) | intergenic (+37/‑60) | greB/yhgF | transcript cleavage factor/putative transcriptional accessory protein | |||||
| * | ? | NC_000913 | 3423270 = | 84 (1.550) | 3 (0.060) | 3/246 | NT | 3.5% | intergenic (+76/+153) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423291 = | 85 (1.670) | intergenic (+97/+132) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | = 3270208 | 36 (0.670) | 1 (0.030) +49 bp |
4/164 | NT | 4.3% | intergenic (+606/+8) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913 | = 3270244 | 36 (0.670) | noncoding (349/377 nt) | rnpB | RNase P, M1 RNA component | |||||
| * | ? | NC_000913 | = 2904148 | 62 (1.150) | 3 (0.060) | 3/248 | NT | 4.7% | intergenic (+774/+599) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | NC_000913 | = 2904152 | 64 (1.250) | intergenic (+778/+595) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | NC_000913 | 2770504 = | 57 (1.050) | 3 (0.060) | 3/250 | NT | 4.9% | coding (60/237 nt) | ypjK | CP4‑57 prophage; putative inner membrane protein |
| ? | NC_000913 | 2770534 = | 61 (1.180) | coding (90/237 nt) | ypjK | CP4‑57 prophage; putative inner membrane protein | |||||