Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	3,526,449	IS5 (+) +4 bp	intergenic (‑300/‑17)	nudE ← / → yrfF	adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288919 =	NA (NA)	53 (1.020)	47/282	0.1	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	3526449 =	0 (0.000)					intergenic (‑300/‑20)	nudE/yrfF	adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein
*	?	NC_000913	= 2290113	NA (NA)	40 (0.780)	35/280	0.5	100%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	= 3526452	0 (0.000)					intergenic (‑303/‑17)	nudE/yrfF	adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein

CCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2289049‑2288919 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGC  >  NC_000913/3526449‑3526589                                                                                                                                                                                                                                                                                  CCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATG                                                                                                                                   <  1:119596/143‑1  CTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGG                                                                                                                                  <  1:736490/143‑1     AAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGA                                                                                                                               >  1:57417/1‑143       gTGGCGGAGAGACGGGCTAAACAGGCGGATTGAAGGCATTTACGGGAGAAAAGATCGGCTCAAACATGAAGAACTGAAATGACTGAGTGAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTGCCCTAAGTAAGATGGGGAAA                                                                                                                             <  2:638554/142‑1                  ACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACC                                                                                                                  >  2:618091/1‑143                    GGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGCGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGCAAAGCATGCGCACCAT                                                                                                                >  2:773498/1‑143                      TCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAAGTTCCCCGCTTATTCGCACCTTCCCTAAGTAAAATGGGGAAAGCATGAGAACCATTG                                                                                                              >  2:141340/1‑143                       CTAAATAGCCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGT                                                                                                             <  1:528684/143‑1                          AATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGCCAGCCGAGAAGAATTTCCCGGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATAAGCACCATTGTGAT                                                                                                          >  2:929641/1‑143                             AGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTT                                                                                                       <  2:367614/143‑1                               gcagaaTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTT                                                                                                     <  1:259019/137‑1                                 TGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTA                                                                                                   <  2:619297/143‑1                                 TGATTCAAGGCATGTACGGGAGAAAAAATCCGCGCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTA                                                                                                   <  2:858742/143‑1                                  GATACAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAG                                                                                                  <  1:843700/143‑1                                     TCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTG                                                                                               >  1:438877/1‑143                                      CAAGGCATTTACGGTAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGC                                                                                              <  2:371318/143‑1                                       AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCT                                                                                             >  2:705292/1‑143                                         ggcggTTACGGGAGAAAACATCGGCTCCAACAGGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTgt                                                                                           <  1:211103/138‑3                                         GGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTT                                                                                           <  2:299839/143‑1                                          gcagtaACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTG                                                                                          <  1:390964/137‑1                                            ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGTTCCTTTttt                                                                                        >  2:413783/1‑140                                             TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTG                                                                                       <  1:260998/143‑1                                               TACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGC                                                                                     <  1:954908/143‑1                                               TACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCACGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGC                                                                                     <  1:622056/143‑1                                               TACGCGAGAAAAAACCAAATTAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGC                                                                                     <  1:735761/143‑1                                                   GGAGAAGGATTCGGCGCAAACATGAAGAAAGGAAAGGCCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGC                                                                                 <  2:908021/143‑1                                                   GGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTACGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGATTTGCTGCCCTGC                                                                                 >  2:49632/1‑143                                                     AGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTC                                                                               <  1:618091/143‑1                                                      GAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGAAGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCA                                                                              <  1:439076/143‑1                                                       AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCAC                                                                             >  1:118759/1‑143                                                         aaaaggaGCTCGAACATGATGAAATGGAGTGACTGAGGCAGCCGAGAAGAATGTGCCCGCGTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCAGGAGCACCATTGTGAGTTTTTTAGCTGCTTTGCTGGCCTGCTCACTA                                                                           <  2:658848/136‑1                                                              CGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGCTTTTTTTAGCTGCTTTGCTGGCCTGCCCACTACTTGC                                                                      >  1:742704/1‑143                                                                GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCACTGTGATTTTTTTAGCTGCTTTGCTGGCCCGCTCGCTGCTTGCGG                                                                    >  2:133579/1‑143                                                                 CTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGG                                                                   <  2:743965/143‑1                                                                    AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTCGCGGGCTG                                                                >  1:241185/1‑143                                                                       CATGAAGAAATGACATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCT                                                             <  2:224920/143‑1                                                                       CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTGCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCT                                                             <  2:728799/143‑1                                                                           AAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACCACTGGCGGGATGGCTGATA                                                         >  1:896374/1‑143                                                                              AAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAA                                                      <  1:705292/143‑1                                                                                  GAAATGACCGAGTCAGCCGAGAAGAATTTCCCCGCTTAATCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATGTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGC                                                  <  2:304399/143‑1                                                                                      TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCAAGATGGGGAAAGGATTTTCACCTTTGTGATTTTTTTAGCTTCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGccc                                              >  2:680005/1‑140                                                                                       GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGCTGGCTGATAAAAGTGCGATCC                                             >  1:266777/1‑143                                                                                        gCTGAGTCAGCCGAGAAGAATTTCCCCGCTTAGTCGGACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCA                                            <  2:538767/142‑1                                                                                                  CCGAGAAGAATTTCCCCGCTTATGCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCTAGACGGCGTCA                                  <  2:530229/143‑1                                                                                                    GAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATGAACGTGCGATCCAGACGGCGCCAGC                                >  2:47337/1‑143                                                                                                       AAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATGTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGa                             >  1:201368/1‑142                                                                                                          AATGTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCT                          <  1:327528/143‑1                                                                                                            TTTCCCCGCTTATTCGCACCTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTCCTTGCGGGATGGCTGATGCAAGTGCGATCCATGCGGCGTCAGCTGCCCTGG                        >  2:357885/1‑143                                                                                                            TTTACCCGCTTATACGCACCGGCCCGAAGTGAGAGGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGG                        <  1:148754/143‑1                                                                                                                          cgacCCTTCCCGAAGGAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGC          <  1:294681/139‑1                                                                                                                               CTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATG     >  1:93128/1‑143                                                                                                                               CTTCCCTAAGTAAGATGGGGAAAGCATGAGCACCATGGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTTACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATG     >  1:619094/1‑143                                                                                                                                  CCCTAAGTAAGATGTGGAAAGCATGAGCACTATTTTGATTTTTTTAGCTGCTTTGATGGCCTGCTCACGAAGTGCGGGAGGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGC  <  1:100024/143‑1                                                                                                                                                                                                                                                                                  CCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2289049‑2288919 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGC  >  NC_000913/3526449‑3526589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.