breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,875,5220CG32.4% 50.9 / 23.4 39L29V (CTG→GTG) yidXputative lipoprotein
*NC_0009133,875,5210TC31.6% 45.2 / 23.5 39A28A (GCT→GCCyidXputative lipoprotein
*NC_0009133,875,5290CG30.0% 77.0 / 13.2 41S31C (TCC→TGC) yidXputative lipoprotein
*NC_0009133,875,5240GC27.5% 65.4 / 20.6 40L29L (CTG→CTCyidXputative lipoprotein
*NC_0009133,875,5310CT27.5% 63.2 / 11.1 41H32Y (CAT→TAT) yidXputative lipoprotein
*NC_0009133,875,5320AT26.8% 69.4 / 17.0 41H32L (CAT→CTT) yidXputative lipoprotein

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 454269026 (1.050)3 (0.130) 3/494 2.2 11.1% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 23 (0.960)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 3640442 =46 (1.860)4 (0.160) 3/506 2.2 10.1% coding (332/435 nt) uspA universal stress global response regulator
?NC_000913 3640978 = 26 (1.060)coding (117/1470 nt) dtpB dipeptide and tripeptide permease B
* ? NC_000913 3638588 =18 (0.730)3 (0.120) 3/500 2.2 12.3% coding (947/1500 nt) pitA phosphate transporter, low‑affinity; tellurite importer
?NC_000913 3638811 = 25 (1.030)coding (1170/1500 nt) pitA phosphate transporter, low‑affinity; tellurite importer
* ? NC_000913 = 151977619 (0.770)3 (0.120) 3/502 2.2 12.1% coding (750/1038 nt) curA curcumin/dihydrocurcumin reductase, NADPH‑dependent
?NC_000913 = 1519950 25 (1.030)coding (924/1038 nt) curA curcumin/dihydrocurcumin reductase, NADPH‑dependent
* ? NC_000913 1388025 =24 (0.970)3 (0.120) 3/500 2.2 11.7% coding (1306/1542 nt) tyrR aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
?NC_000913 1388107 = 22 (0.910)coding (1388/1542 nt) tyrR aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase