| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 26 [1] | [0] 25 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 1 (0.050) | 24 (1.270) | 21/268 | 0.1 | 98.1% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC > NC_000913/257768‑258047 | ttAAAAATTTGCTAAATTTGGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCATTAGTCCCTTATATTCGTGAAGGTAagt < 2:335919‑M1/143‑4 (MQ=255) tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACACCAGGCGATAGCAATGACGTTCCCGAGTGGACACCCGAAGAGCAGGTTGATCAAAAAATACACCGCACTAGACCCGAAAAATCGTGAAGATAagag > 1:301815‑M1/1‑139 (MQ=255) aaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGAAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTGGTGAAAGAAagtgca > 2:364051‑M1/1‑137 (MQ=255) tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc < 2:107785‑M1/143‑16 (MQ=255) catttgcaCCACAACAAGATATCGCAATTACTTTACCCAGTCGACACCCTAAGAGCTGATTGAGCAAAAAATTGACCGCACTTGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct < 2:331854‑M1/140‑39 (MQ=255) gTTGCATCACAGCAGGGGATAGCACTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCTTGAAGGTAagtgcaaatataatcgattctttttcgattgtctggctgt < 2:298178‑M1/143‑41 (MQ=255) cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTAATAAAAAAATTTACCGCAATAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc > 1:229937‑M1/1‑99 (MQ=255) ggttctagcaaTTACGTTTCCGAGTGGACCCCCGATGAGCAGTTTGATTAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtga < 2:91015‑M1/138‑55 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGAATATTCGTGAAGGTAagtgcaaagataatcgattctttttcaattgtctggctgtatgcgtcaacgtgaaaccggcaccggaaacacgtgaattct > 2:71787‑M1/1‑62 (MQ=255) gccggattgATCAAAAATTTTACCGCAGTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgagtgtctggctgtatgcgtcaacgtgaacccggcaccggaagtgcgtgaattctggggctggtg < 2:28484‑M1/139‑92 (MQ=255) agCATATTGATTAAATAATTTACCGTACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg < 2:174738‑M1/143‑92 (MQ=255) gCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgccaagacaagcgtttctttttcgtttgtctggctgtatgcgtaaatgtgaaaacagaacaggaagaacgtgaattctggggctggtgg > 1:98572‑M1/1‑51 (MQ=255) aTTGATCATAAAATTTACCTGTCTGTGGCCGTATATTCGTGAAGGTAagtgcaaagatagtcgattcttgggcgatgggctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg < 1:106180‑M1/143‑97 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCACGTATATTCGTGAAGGTAagtgcaaagataatcgattctgtttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagggcgtgcattcgggggatggtagaatg > 2:211535‑M1/1‑47 (MQ=255) cgttcaaAAGAGTTACCGCACTAGGCGCGTATATTCGTGAAGGTAagtgcaaagagaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggag < 2:320757‑M1/140‑99 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtaggcgtcaacgcgaaaccggcaccggaagtacgtggattctggggctggtggatggagctgga > 2:39183‑M1/1‑40 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGCAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccagcaccggaagtgcgtgaattctgggacaagtggagggagctgct > 2:328831‑M1/1‑40 (MQ=255) aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgcttctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggcgctggtggatggagctggaa > 2:50634‑M1/1‑39 (MQ=255) aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacatgaaaccggcaccgaaagaacgaaaaatctggggctggtggatggagctggaa > 1:307647‑M1/1‑39 (MQ=255) aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtaggagtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagc < 1:111471‑M1/143‑107 (MQ=255) gcgctagGCCCGTATATTCGTGGAGGTAagtgcaaggataatcgattcttggtggatggtcgggcggtatgcggcaacgtgaaaccggcaccggaagggcgtgaattctggggctggtggatggagctggaagcgcaggaatc < 1:16215‑M1/140‑116 (MQ=255) tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggttgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggagggagctggaagcgcaggaatcccgttttacctaca < 1:45849‑M1/143‑130 (MQ=255) atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgggaaaccgaccacggaagtacgagaattctggggccggtggatggagccggcagcgcaggaatcgcggtctccctaccg > 2:90782‑M1/1‑13 (MQ=255) ctttGAAGGTCGGTAATGACTCCTACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAg < 1:27316/140‑1 (MQ=0) gTGAATGTAagttcaaatattttcttttcttttttgatggtcttgttgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttac < 1:11540‑M1/143‑135 (MQ=255) gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcatcggtagtgctttaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagttt < 1:27535‑M1/143‑141 (MQ=255) | TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC > NC_000913/257768‑258047 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |