Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908 258683 776 26 [1] [0] 25 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579071 (0.050)24 (1.270) 21/268 0.1 98.1% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTT  >  NC_000913/258544‑258823
                                                                                                                                            |                                                                                                                                           
ttaaaaatttgctaaatttggccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcattagtcccttatattcgtgaaggtaAGt                                                                                                                                           <  2:335919‑M2/3‑1 (MQ=255)
 taaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaccaggcgatagcaatgacgttcccgagtggacacccgaagagcaggttgatcaaaaaatacaccgcactagacccgaaaaatcgtgaagataagag                                                                                                                                          >  1:301815‑M2/140‑141 (MQ=255)
   aaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagaagattgatcaaaaaatttaccgcactaggcccgtatattggtgaaagaaAGTGCa                                                                                                                                        >  2:364051‑M2/138‑143 (MQ=255)
            taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc                                                                                                                               <  2:107785‑M2/15‑1 (MQ=255)
                                   catttgcaccacaacaagatatcgcaattactttacccagtcgacaccctaagagctgattgagcaaaaaattgaccgcacttggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt                                                                                                        <  2:331854‑M2/38‑1 (MQ=255)
                                     gttgcatcacagcaggggatagcactgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcttgaaggtaAGTGCAAATATAATCGATTCTTTTTCGATTGTCTGGCTGt                                                                                                      <  2:298178‑M2/40‑1 (MQ=255)
                                         catcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattaataaaaaaatttaccgcaataggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc                                                                                                  >  1:229937‑M2/100‑143 (MQ=255)
                                                   ggttctagcaattacgtttccgagtggacccccgatgagcagtttgattaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGa                                                                                        <  2:91015‑M2/54‑1 (MQ=255)
                                                                              acacccgaagagcagattgatcaaaaaatttaccgcactaggcccgaatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCAATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAACACGTGAATTCt                                                             >  2:71787‑M2/63‑143 (MQ=255)
                                                                                        gccggattgatcaaaaattttaccgcagtaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAGTGTCTGGCTGTATGCGTCAACGTGAACCCGGCACCGGAAGTGCGTGAATTCTGGGGCtggtg                                                   <  2:28484‑M2/91‑1 (MQ=255)
                                                                                        agcatattgattaaataatttaccgtactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggtg                                                   <  2:174738‑M2/91‑1 (MQ=255)
                                                                                         gcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCCAAGACAAGCGTTTCTTTTTCGTTTGTCTGGCTGTATGCGTAAATGTGAAAACAGAACAGGAAGAACGTGAATTCTGGGGCtggtgg                                                  >  1:98572‑M2/52‑143 (MQ=255)
                                                                                             attgatcataaaatttacctgtctgtggccgtatattcgtgaaggtaAGTGCAAAGATAGTCGATTCTTGGGCGATGGGCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatgg                                              <  1:106180‑M2/96‑1 (MQ=255)
                                                                                             attgatcaaaaaatttaccgcactaggcacgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTGTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGGGCGTGCATTCGGGGGAtggtagaatg                                              >  2:211535‑M2/48‑140 (MQ=255)
                                                                                               cgttcaaaagagttaccgcactaggcgcgtatattcgtgaaggtaAGTGCAAAGAGAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAg                                            <  2:320757‑M2/98‑1 (MQ=255)
                                                                                                    aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAGGCGTCAACGCGAAACCGGCACCGGAAGTACGTGGATTCTGGGGCTGGTGGATGGAGCTGGa                                       >  2:39183‑M2/41‑143 (MQ=255)
                                                                                                    aaaaaatttaccgcactaggcccgtatattcgtgaaggcaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCAGCACCGGAAGTGCGTGAATTCTGGGACAAGTGGAGGGAGctgct                                       >  2:328831‑M2/41‑141 (MQ=255)
                                                                                                     aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGCTTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGCGCTGGTGGATGGAGCTGGaa                                      >  2:50634‑M2/40‑143 (MQ=255)
                                                                                                     aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACATGAAACCGGCACCGAAAGAACGAAAAATCTGGGGCTGGTGGATGGAGCTGGaa                                      >  1:307647‑M2/40‑143 (MQ=255)
                                                                                                       aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAGGAGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAgc                                    <  1:111471‑M2/106‑1 (MQ=255)
                                                                                                                gcgctaggcccgtatattcgtggaggtaAGTGCAAGGATAATCGATTCTTGGTGGATGGTCGGGCGGTATGCGGCAACGTGAAACCGGCACCGGAAGGGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATc                           <  1:16215‑M2/115‑1 (MQ=255)
                                                                                                                              tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGTTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGAGGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACa             <  1:45849‑M2/129‑1 (MQ=255)
                                                                                                                               attcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGGGAAACCGACCACGGAAGTACGAGAATTCTGGGGCCGGTGGATGGAGCCGGCAGCGCAGGAATCGCGGTCTCCCtaccg            >  2:90782‑M2/14‑141 (MQ=255)
                                                                                                                                   gtgaatgtaAGTTCAAATATTTTCTTTTCTTTTTTGATGGTCTTGTTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTAc        <  1:11540‑M2/134‑1 (MQ=255)
                                                                                                                                         gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCATCGGTAGTGCTTTAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGttt  <  1:27535‑M2/140‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                           
CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTT  >  NC_000913/258544‑258823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.