Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908 258683 776 26 [1] [0] 25 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579071 (0.050)24 (1.270) 21/268 0.1 98.1% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913/257768‑258047
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ttAAAAATTTGCTAAATTTGGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCATTAGTCCCTTATATTCGTGAAGGTAagt                                                                                                                                           <  2:335919‑M1/143‑4 (MQ=255)
 tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACACCAGGCGATAGCAATGACGTTCCCGAGTGGACACCCGAAGAGCAGGTTGATCAAAAAATACACCGCACTAGACCCGAAAAATCGTGAAGATAagag                                                                                                                                          >  1:301815‑M1/1‑139 (MQ=255)
   aaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGAAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTGGTGAAAGAAagtgca                                                                                                                                        >  2:364051‑M1/1‑137 (MQ=255)
            tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                               <  2:107785‑M1/143‑16 (MQ=255)
                                   catttgcaCCACAACAAGATATCGCAATTACTTTACCCAGTCGACACCCTAAGAGCTGATTGAGCAAAAAATTGACCGCACTTGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                        <  2:331854‑M1/140‑39 (MQ=255)
                                     gTTGCATCACAGCAGGGGATAGCACTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCTTGAAGGTAagtgcaaatataatcgattctttttcgattgtctggctgt                                                                                                      <  2:298178‑M1/143‑41 (MQ=255)
                                         cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTAATAAAAAAATTTACCGCAATAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc                                                                                                  >  1:229937‑M1/1‑99 (MQ=255)
                                                   ggttctagcaaTTACGTTTCCGAGTGGACCCCCGATGAGCAGTTTGATTAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtga                                                                                        <  2:91015‑M1/138‑55 (MQ=255)
                                                                              acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGAATATTCGTGAAGGTAagtgcaaagataatcgattctttttcaattgtctggctgtatgcgtcaacgtgaaaccggcaccggaaacacgtgaattct                                                             >  2:71787‑M1/1‑62 (MQ=255)
                                                                                        gccggattgATCAAAAATTTTACCGCAGTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgagtgtctggctgtatgcgtcaacgtgaacccggcaccggaagtgcgtgaattctggggctggtg                                                   <  2:28484‑M1/139‑92 (MQ=255)
                                                                                        agCATATTGATTAAATAATTTACCGTACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg                                                   <  2:174738‑M1/143‑92 (MQ=255)
                                                                                         gCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgccaagacaagcgtttctttttcgtttgtctggctgtatgcgtaaatgtgaaaacagaacaggaagaacgtgaattctggggctggtgg                                                  >  1:98572‑M1/1‑51 (MQ=255)
                                                                                             aTTGATCATAAAATTTACCTGTCTGTGGCCGTATATTCGTGAAGGTAagtgcaaagatagtcgattcttgggcgatgggctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg                                              <  1:106180‑M1/143‑97 (MQ=255)
                                                                                             aTTGATCAAAAAATTTACCGCACTAGGCACGTATATTCGTGAAGGTAagtgcaaagataatcgattctgtttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagggcgtgcattcgggggatggtagaatg                                              >  2:211535‑M1/1‑47 (MQ=255)
                                                                                               cgttcaaAAGAGTTACCGCACTAGGCGCGTATATTCGTGAAGGTAagtgcaaagagaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggag                                            <  2:320757‑M1/140‑99 (MQ=255)
                                                                                                    aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtaggcgtcaacgcgaaaccggcaccggaagtacgtggattctggggctggtggatggagctgga                                       >  2:39183‑M1/1‑40 (MQ=255)
                                                                                                    aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGCAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccagcaccggaagtgcgtgaattctgggacaagtggagggagctgct                                       >  2:328831‑M1/1‑40 (MQ=255)
                                                                                                     aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgcttctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggcgctggtggatggagctggaa                                      >  2:50634‑M1/1‑39 (MQ=255)
                                                                                                     aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacatgaaaccggcaccgaaagaacgaaaaatctggggctggtggatggagctggaa                                      >  1:307647‑M1/1‑39 (MQ=255)
                                                                                                       aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtaggagtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagc                                    <  1:111471‑M1/143‑107 (MQ=255)
                                                                                                                gcgctagGCCCGTATATTCGTGGAGGTAagtgcaaggataatcgattcttggtggatggtcgggcggtatgcggcaacgtgaaaccggcaccggaagggcgtgaattctggggctggtggatggagctggaagcgcaggaatc                           <  1:16215‑M1/140‑116 (MQ=255)
                                                                                                                              tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggttgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggagggagctggaagcgcaggaatcccgttttacctaca             <  1:45849‑M1/143‑130 (MQ=255)
                                                                                                                               atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgggaaaccgaccacggaagtacgagaattctggggccggtggatggagccggcagcgcaggaatcgcggtctccctaccg            >  2:90782‑M1/1‑13 (MQ=255)
                                                                                                                                 ctttGAAGGTCGGTAATGACTCCTACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAg          <  1:27316/140‑1 (MQ=0)
                                                                                                                                   gTGAATGTAagttcaaatattttcttttcttttttgatggtcttgttgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttac        <  1:11540‑M1/143‑135 (MQ=255)
                                                                                                                                         gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcatcggtagtgctttaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagttt  <  1:27535‑M1/143‑141 (MQ=255)
                                                                                                                                           |                                                                                                                                            
TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913/257768‑258047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: