Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,375,828 IS186 (+) +4 bp coding (132‑135/963 nt) menC ← O‑succinylbenzoyl‑CoA synthase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2375828 =1 (0.020)56 (0.880) 47/274 0.3 98.2% coding (135/963 nt) menC O‑succinylbenzoyl‑CoA synthase
?NC_000913 = 2515617 NA (NA)noncoding (1345/1345 nt) IS186 repeat region
* ? NC_000913 = 23758311 (0.020)73 (1.140) 61/274 0.0 98.6% coding (132/963 nt) menC O‑succinylbenzoyl‑CoA synthase
?NC_000913 2514273 = NA (NA)noncoding (1/1345 nt) IS186 repeat region

Only 100 of 131 total aligned reads displayed.

CAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTC  >  NC_000913/2375690‑2375971
                                                                                                                                             |                                                                                                                                            
cAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGCGATCt                                                                                                                                             >  2:433698‑M1/1‑142 (MQ=255)
     cacaGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccat                                                                                                                                        >  1:908756‑M1/1‑137 (MQ=255)
      acaGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccata                                                                                                                                       <  2:865409‑M1/143‑8 (MQ=255)
       gtggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCa                                                                                                                                      <  1:302640‑M1/12‑1 (MQ=255)
          gccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCAccc                                                                                                                                   <  1:729181‑M1/15‑1 (MQ=255)
            cattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCtt                                                                                                                                 <  2:441845‑M1/17‑1 (MQ=255)
              ttcgtgggacagtatccctgacagcctacaaaacgcaattgacgaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttccgatggttcaacccttaagttagcgcttatgggaGCTCTCCCCCCCCCCTTcg                                                                                                                               <  1:731486‑M1/19‑1 (MQ=255)
               gCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGACTCCCGGCCGTGGGGAGATCTCCCCCCCCCCTTctc                                                                                                                              >  1:4015/1‑141 (MQ=255)
                   acgtccacggTAGGCCTCTGCGGTCGCTCGCACTCGCCTGCCAGCCGGTGATTTGCCCAGGCAAGCAGCACACTCTGCGCCTCTGCCCAGGTGTCCTGACGGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaa                                                                                                                          <  2:569066‑M1/139‑21 (MQ=255)
                    aGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaag                                                                                                                         <  1:1131121‑M1/143‑22 (MQ=255)
                     gacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGc                                                                                                                        >  1:1106483‑M1/118‑143 (MQ=255)
                      gCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCCCACTTTGCGCCTCTTCCCAGGTTTCTTGACTGAAAACCGGCAATGAGAAAATCtcccataaacgctaacttacagg                                                                                                                       >  1:928641‑M1/1‑120 (MQ=255)
                      gCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCATGTTTCCTGACTGAAGCCCGGCAGTGGGGAGAGCtcacataagcgctcccctaaggg                                                                                                                       >  1:43865‑M1/1‑120 (MQ=255)
                      gCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGCTTCCTGACTGAAGCCCGGCAGCGGGGAGATCtcccataagcgccaacttgagcg                                                                                                                       >  2:934512‑M1/1‑120 (MQ=255)
                       ccACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAAATCtcccataagcgctcacttaaggga                                                                                                                      >  2:519452‑M1/1‑119 (MQ=255)
                         gtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGACTTc                                                                                                                    <  1:306426‑M1/30‑1 (MQ=255)
                         aCGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGCTATTTACCCAGCCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGCCAGTGCGGAGATCtcccataagcgctaacttaaggaccg                                                                                                                    >  2:690775‑M1/1‑117 (MQ=255)
                           atccctgacagcctacaaaacgcaattgaagaacgcggggcatcgtcgtagcgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCCCCCTTCGCGCTCGCCTTCAc                                                                                                                  <  1:238010‑M1/32‑1 (MQ=255)
                             aaGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggt                                                                                                                <  1:319412‑M1/143‑31 (MQ=255)
                             aaGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCccccataagcgctaacttaagggttgtggt                                                                                                                >  2:311869‑M1/1‑113 (MQ=255)
                               ctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAg                                                                                                              <  1:841943‑M1/36‑1 (MQ=255)
                                  aTCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattac                                                                                                           >  1:906062‑M1/1‑108 (MQ=255)
                                   tCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacg                                                                                                          >  2:43271‑M1/1‑107 (MQ=255)
                                      gCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagggctaacttaagggttgtggtattacgcct                                                                                                       >  1:999366‑M1/1‑104 (MQ=255)
                                      gCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCAGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgccc                                                                                                       >  1:606176‑M1/1‑104 (MQ=255)
                                            aaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGc                                                                                                 >  1:755975‑M1/95‑143 (MQ=255)
                                             cTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatga                                                                                                <  1:866527‑M1/143‑47 (MQ=255)
                                             aacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCCGGCAAACATACAGcc                                                                                                <  1:774178‑M1/50‑1 (MQ=255)
                                              tCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttg                                                                                                                    >  2:749070‑M1/1‑96 (MQ=255)
                                              tCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttg                                                                                                                    <  1:749070‑M1/122‑27 (MQ=255)
                                              tCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGCTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatggt                                                                                               >  2:79986‑M1/1‑96 (MQ=255)
                                               cGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatgtggtt                                                                                              >  1:458327‑M1/1‑95 (MQ=255)
                                                 cAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgattta                                                                                            <  2:951516‑M1/143‑51 (MQ=255)
                                                  aaTCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTAACTGAAGCCCGGCAGTGGGGAGAACtaccataagcgctaacttaagggttgtggtattaagcctgataggatctaa                                                                                           >  1:1019405‑M1/1‑92 (MQ=255)
                                                    tCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGCAGCCCGGCCGTGGGGAGATCtcccataaacgcaaacttaaggaatgtggtattacgcctgatatgataaaacg                                                                                         >  1:854007‑M1/1‑90 (MQ=255)
                                                     tgaagaacgcgcggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaggttagcgctgatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCgg                                                                                        >  2:221838‑M1/86‑143 (MQ=255)
                                                       ccTGCCAGCCAGTTATTTGCCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCttccataagcgctaacttaagggttgtggtattacgcctgatatgctttaacgtgc                                                                                      <  2:820325‑M1/143‑57 (MQ=255)
                                                         cgacgcgagccatcgtcttaacgcggcaccgaggcgtcgcattcttcagatggttcaccccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGttt                                                                                    >  2:24119‑M1/82‑143 (MQ=255)
                                                          gccagccaGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGCTCtcccataagcgctaacttaagggttgtggtattacggctggtatgatttatcgtgccga                                                                                   >  1:667000‑M1/1‑84 (MQ=255)
                                                           tcgcgaggcattgtcttaacggggcaccgaggcgtcgcattcttcagatggttcaacccttcagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGttttt                                                                                  >  2:109779‑M1/80‑143 (MQ=255)
                                                           ccagccagTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgat                                                                                  <  2:413393‑M1/143‑61 (MQ=255)
                                                             agccagTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatga                                                                                <  2:680631‑M1/143‑63 (MQ=255)
                                                              cgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCGTTCACGCAGGCAAACATACAACCCGGCGCGGGGTGTTAAc                                                                               <  2:843490‑M1/67‑1 (MQ=255)
                                                              cgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAAc                                                                               <  1:252755‑M1/67‑1 (MQ=255)
                                                               ccagTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaat                                                                              >  2:1006727‑M1/1‑79 (MQ=255)
                                                               ccagTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggctgtggtattactcctgatatgatttaacgcgccgctgact                                                                              >  1:1097767‑M1/1‑79 (MQ=255)
                                                                cagTTATTTACCCAGGCAAGCAGCACACGTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaatt                                                                             <  1:3704‑M1/143‑66 (MQ=255)
                                                                  gTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCCGGTTTCCTGTCTGGAGCCCGGCAGTGGGGAGCTAtcccataagagctaactgaaggggtgtggtgttacgcctgatatgctttaacctgccgctgaattgc                                                                           >  2:191998‑M1/1‑76 (MQ=255)
                                                                   ttATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacgtaagggatggggtgttacgcccgatgtgattgaacgtgccgatgaatcact                                                                          >  1:510577‑M1/1‑75 (MQ=255)
                                                                        tACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcac                                                                     <  1:519452‑M1/143‑74 (MQ=255)
                                                                        tACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcac                                                                     >  1:88857‑M1/1‑70 (MQ=255)
                                                                          gtaacgaggcaccgaggcggcgcattctgcagacggttcaacccttaagttagcgcgtatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCgcgc                                                                   >  1:552947‑M1/65‑143 (MQ=255)
                                                                           taacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCa                                                                  >  1:409843‑M1/64‑143 (MQ=255)
                                                                           ccAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCTCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtcccgctcgattcatctcacgat                                                                  >  2:160516‑M1/1‑67 (MQ=255)
                                                                            aacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTACCCCCCTGTCGCGCAg                                                                 <  1:307748‑M1/81‑1 (MQ=255)
                                                                             aGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataa                                                                <  1:522224‑M1/143‑79 (MQ=255)
                                                                              cggggctccgaggcgtcgcattcttcacatggttcaacgcttaagttagcgcttatgggaGCTCTCCGCCCACCGTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCAGGTTTTTAACCGCCTGTCGCGCAGaa                                                               >  2:724398‑M1/61‑143 (MQ=255)
                                                                               gCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaaggggtgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataact                                                              >  1:676864‑M1/1‑63 (MQ=255)
                                                                                  gcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGTCAAACATACCCCCCGTCGCGGGTTTTTGACCGCCTGACGGTCCGAaccac                                                           <  2:41224‑M1/87‑1 (MQ=255)
                                                                                      cgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCAccccc                                                       >  1:441845‑M1/53‑143 (MQ=255)
                                                                                       cacaCTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcccgataactgctcagca                                                      >  2:616323‑M1/1‑55 (MQ=255)
                                                                                         cacTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgataggatttaacgtgccgatgaattactctcacgataactgggcagcaat                                                    >  1:1005373‑M1/1‑53 (MQ=255)
                                                                                            tttGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtgccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatggattactctcacgataactggtcagcaattct                                                 <  2:134369‑M1/143‑94 (MQ=255)
                                                                                            ttggcgcctcTGCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattct                                                 <  2:36662‑M1/140‑94 (MQ=255)
                                                                                             ttGCGCCTCTCCCCAGGTTTCCGGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctg                                                <  1:612759‑M1/143‑95 (MQ=255)
                                                                                              cgcgccTCTTCCCAGGTTTCCGGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccggtgaattactctcacgataactggtcagcaattctgg                                               <  1:764394‑M1/142‑96 (MQ=255)
                                                                                              cgccttctgcagatggctccacccgtaagcgagcgcttatggtaGGTCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACTGACGTCCCGTCGCGGGTTTGTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCAt                                               >  2:901224‑M1/45‑143 (MQ=255)
                                                                                               gcgtCTCGTCCCATGTTTCCTGACTGAAGCCCGGCACTGGGTAGATCtcccatatgcgctaacttatggtttgtgttattacgcctgatattatttatcgtgcctatgaattactctcacgataactggtcagcaattctggc                                              <  2:153945‑M1/143‑97 (MQ=255)
                                                                                               gcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCCAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGCACCACCACCGCGTCCATg                                              <  2:690895‑M1/100‑1 (MQ=255)
                                                                                               gagccgCTTCCCAGGTTTCCTGACGGAAGCCCGGCAGGGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggc                                              <  1:243506‑M1/141‑97 (MQ=255)
                                                                                                  ttcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATgggg                                           >  2:813392‑M1/41‑143 (MQ=255)
                                                                                                   tcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGa                                          <  1:247185‑M1/104‑1 (MQ=255)
                                                                                                     ttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATc                                        <  2:176780‑M1/106‑1 (MQ=255)
                                                                                                     ttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGCTTTTTAACCGCCTGTCGCGCAGGACCTCCCCCGCGTCCATGGGGATc                                        <  1:786661‑M1/106‑1 (MQ=255)
                                                                                                      ccagatggttcaacccttaagtgagcgcttatgggaGATCTCCCCCCCCCCTTCGCGCTCGCCCTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCt                                       >  1:1157624‑M1/37‑143 (MQ=255)
                                                                                                       tCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgccaaatgtcctttaacatgccgatgaattactctcacgataactggtcagcaattctggcccatattg                                      <  1:221249‑M1/143‑105 (MQ=255)
                                                                                                         ccAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggt                                    >  1:197535‑M1/1‑37 (MQ=255)
                                                                                                         ccAGGTTGCCGGAGTGAGGGCCGGGAGTGGGGGGATCtccgataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggt                                    <  2:885980‑M1/143‑107 (MQ=255)
                                                                                                          atggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCa                                   <  1:361273‑M1/111‑1 (MQ=255)
                                                                                                             cttcagcccttaaggtagcgcttatgggaGATCTCCCCCCACCCTCCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGGCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCg                                >  2:1187902‑M1/30‑143 (MQ=255)
                                                                                                              ctcaaccctgaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCGCGCCTTCACGCACGCAAACAGACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCgg                               >  2:238010‑M1/29‑143 (MQ=255)
                                                                                                                tCCTGACTGGAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccg                             <  1:1075647‑M1/143‑114 (MQ=255)
                                                                                                                  ctgactgaAGCCCGGCAGTGGGGAGATCtcccataagcgctaagttaagggttgtggtattacgcgtgagatgatttaacgtgcagatgaattactctcaagataagtggtgagcaatgttgggctatatttgtaagcccgaa                           >  2:1025272‑M1/1‑28 (MQ=255)
                                                                                                                   cccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCCCGCCCTCACGCTCCCAATCATACAGCCCGTCGCGGGTTTTTAACCGCCTGGCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATAc                          >  1:864549‑M1/24‑143 (MQ=255)
                                                                                                                       tgaAGCTCGGCGTTGTGGAGATCtcccataagcgctaccttaagggtggtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaact                      <  2:750965‑M1/143‑121 (MQ=255)
                                                                                                                        gaAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactg                     <  1:1154286‑M1/143‑122 (MQ=255)
                                                                                                                         aaGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgcc                                                                                     >  2:1055619‑M1/1‑21 (MQ=255)
                                                                                                                         aaGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgcc                                                                                     <  1:1055619‑M1/78‑58 (MQ=255)
                                                                                                                             ccGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatctgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactggatac                <  1:43271‑M1/143‑127 (MQ=255)
                                                                                                                               cgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATATCTGCGCGCTACg              >  2:252755‑M1/12‑143 (MQ=255)
                                                                                                                                gtagtGGGGAGTTCtgccttaagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactggatacttc             <  2:1135683‑M1/141‑130 (MQ=255)
                                                                                                                                gcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGc             <  1:669827‑M1/133‑1 (MQ=255)
                                                                                                                                gcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCCGGCAGCGGTACACCAGAGCGAtacac             <  2:107074‑M1/133‑3 (MQ=255)
                                                                                                                                  ttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGTACAAACCCCGCGTCCATGGGGAGCAGCCAGCGGTCTACCTccgcgctcccccc           <  2:774395‑M1/135‑7 (MQ=255)
                                                                                                                                  aGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgcagaactggatactgcgg           >  1:1149720‑M1/1‑12 (MQ=255)
                                                                                                                                    tGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgagatgatttaacgtgccgatgagttactctcacgataactggtcagcaattctggcccgacgtggtaagcccgacgaccgggaggattcggca         >  1:824250‑M1/1‑10 (MQ=255)
                                                                                                                                        gaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGa     >  1:225676‑M1/3‑143 (MQ=255)
                                                                                                                                          gaTCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGAtt   <  2:116987/143‑1 (MQ=255)
                                                                                                                                           agctcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcatcaattctggcccatattggtaagcccgaagaactggatacttcggcacgtaatg  <  1:619651‑M1/141‑141 (MQ=255)
                                                                                                                                           aTCtcccataagcgctaacttaagggttgtggtattacgcctgatatgattaaacgtgcggatgaattactctcacgataactggtcagcaattctggcccatcttggtagtcccgaagaactggatacttcgccacgtatgg  >  2:1076342‑M1/1‑3 (MQ=255)
                                                                                                                                             |                                                                                                                                            
CAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTC  >  NC_000913/2375690‑2375971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.